Job Description P08201 Confidence 99.93% Date Thu Jan 5 11:00:55 GMT 2012 Rank 91 Aligned Residues 301 % Identity 17% Template c3s5wB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:l-ornithine 5-monooxygenase; PDBTitle: ornithine hydroxylase (pvda) from pseudomonas aeruginosa Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure																										.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	.	A	A	N	F	D	I	T	V	F	C	E	E	P	R	I	A	Y	D	R	V	H	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	D	L	I	G	V	G	F	G	P	S	N	I	A	L	A	I	A	L	Q	E	R	A	Q	A	Q	G	A	L	E	V	L	F	L	D	K	Q	G	D	Y	R	W	H	G	N	T	L	V	S	Q	S	E	L	Q	I	S	F	L	K	D	L	V	S	L	R	N	P	T	S	P	Y	S	F	V	N	Y	L	H	K	H
Template Known Secondary structure			S							S																											S		S	S			S	S	G	G	G			S	S		B		S	S		G	G	G	S	S	S	T	T	T		T	T	S	T	T	S								T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
										51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90										.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.									.	.
Query SS confidence		.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.									.	.
Query Sequence		.	.	.	.	.	.	.	.	S	Y	F	S	H	H	T	A	E	E	L	S	L	V	R	E	G	F	Y	E	K	H	G	I	K	V	L	V	G	E	R	A	I	T	I	N	R	Q	E	K	.	.	.	.	.	.	.	.	.	V	I	H	S	S	A	G	R	.	.	T	V	F	Y	D	K	L	I	M	A	T	G	S
Query Conservation		.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.									.	.
Alig confidence		.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		D	R	L	V	D	F	I	N	L	G	T	F	Y	P	C	R	M	E	F	N	D	Y	L	R	W	V	A	S	H	F	Q	E	Q	S	R	Y	G	E	E	V	L	R	I	E	P	M	L	S	A	G	Q	V	E	A	L	R	V	I	S	R	N	A	D	G	E	E	L	V	R	T	T	R	A	L	V	V	S	P	G	G
Template Known Secondary structure		T									T		S			B													G	G	G	T	T	T				S												T	T												T	T	S								S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																										.	.																	.	.	.	.	.	.
Query SS confidence																																																										.	.																	.	.	.	.	.	.
Query Sequence		Y	P	W	I	P	P	I	K	G	S	D	T	Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	S	C	A	R	R	S	K	R	G	A	V	V	G	G	G	L	L	G	L	E	A	A	G	A	L	K	N	L	.	.	G	I	E	T	H	V	I	E	F	A	P	M	L	M	A	E	.	.	.	.	.	.
Query Conservation																																																										.	.																	.	.	.	.	.	.
Alig confidence																									.	.	.	.																														.	.																	.	.	.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		T	P	R	I	P	Q	V	F	R	A	L	K	G	D	G	R	V	F	H	H	S	Q	Y	.	.	.	.	L	E	H	M	A	K	P	M	K	I	A	I	I	G	G	G	Q	S	A	A	E	A	F	I	D	L	N	D	S	Y	P	S	V	Q	A	D	M	I	L	R	A	S	A	L	K	P	A	D	D	S	P	F	V
Template Known Secondary structure							G	G	G	G	G	G	T	T		T	T				G	G	G		.	.	.	.					T											S															T	T								S	S	S	S			B					T	T	G
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
															184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200																											.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	D	Q	M	G	G	E	Q	L	R	R	K	I	E	S	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	R	V	H	T	S	K	N	T	L	E	I	V	Q	E	G	V	E	A	R	K	T	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	E	V	F	A	P	K	F	T	D	L	I	Y	S	R	E	H	A	E	R	E	R	L	L	R	E	Y	H	N	T	N	Y	S	V	V	D	T	D	L	I	E	R	I	Y	G	V	F	Y	R	Q	K	V	S	G	I	P	R	H	A	F	R	C	M	T	T	V	E	R	A	T	A	T	A	Q	G	I	E	L	A	L
Template Known Secondary structure		G	G	G	G	S									T	S												T	G	G	G	T	S	S		B																			T				S				T	T										S	S	S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		225				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure			.	.	.																								.	.																							.	.	.
Query SS confidence			.	.	.																								.	.																							.	.	.
Query Sequence		R	.	.	.	F	A	D	G	S	E	L	E	V	D	F	I	V	F	S	T	G	I	R	P	R	D	K	.	.	L	A	T	Q	C	G	L	D	V	A	P	R	G	G	I	V	I	N	D	S	C	Q	.	.	.	T	S	D	P	D	I	Y	A	I	G	E	C	A	S	W	N	N	R	V	F	G	L	V	A	P	G
Query Conservation			.	.	.																								.	.																							.	.	.
Alig confidence			.	.	.																								.	.											.												.	.	.
Template Conservation																																									.
Template Sequence		R	D	A	G	S	G	E	L	S	V	E	T	Y	D	A	V	I	L	A	T	G	Y	E	R	Q	L	H	R	Q	L	L	E	P	L	A	E	Y	L	G	.	D	H	E	I	G	R	D	Y	R	L	Q	T	D	E	R	C	K	V	A	I	Y	A	Q	G	F	S	Q	A	S	H	G	L	S	D	T	L	L	S	V	L
Template Known Secondary structure				T	T	T									S												S	S	S	S	S	S	G	G	G	G	G	G	B		.	S	S				T	T	S	B			B		T	T	B		S					S	S								T	T	T	T	S	S	T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	M	A	Q	V	A	V	D	H	I	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	R	A	E	E	I	S	G	S	L	Y	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions