Job Description P08201 Confidence 98.11% Date Thu Jan 5 11:00:55 GMT 2012 Rank 272 Aligned Residues 232 % Identity 15% Template c3p1wA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:rabgdi protein; PDBTitle: crystal structure of rab gdi from plasmodium falciparum, pfl2060c Resolution 1.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																													.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	R	I	A	Y	D	R	V	H	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	F
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence		E	H	Y	D	V	I	I	L	G	T	G	L	K	E	C	I	L	S	G	L	L	S	H	Y	G	.	.	.	.	K	K	I	L	V	L	D	R	N	P	Y	Y	G	G	E	T	A	S	L	N	L	T	N	L	Y	N	T	F	K	P	K	E	N	I	P	S	K	Y	G	E	N	R	H	W	N	V	D	L	I	P	K
Template Known Secondary structure												S													T	T	.	.	.	.								S	S	S	S	S		G	G	G														T	T	S				G	G	G			G	G	G					S	S
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	H	H	T	A	E	E	L	S	L	V	R	E	G	F	Y	E	K	H	G	I	K	V	L	V	G	E	R	A	I	T	I	N	R	Q	E	K	V	I	H	S	S	A	G	R	T	V	F	Y	D	K	L	I	M	A	T	G	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.
Template Sequence		F	I	L	V	G	G	N	L	V	K	I	L	K	K	T	R	V	T	N	Y	L	E	W	L	V	V	E	G	S	Y	V	Y	Q	H	Q	K	K	.	.	.	.	.	.	.	G	F	L	T	S	E	K	F	I	H	K	V	P	A	T	D	M	E	A	L	V	S	P	L	L	S	L	M	E	K	N	R	C	K	N	F
Template Known Secondary structure		B			T	T	S									T	T		G	G	G	S						S											.	.	.	.	.	.	.		S	S	S											S						T		T	T	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.								.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
							113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.										.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	P	W	I	P	P	I	K	G	S	D	T	Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	S	C	A	R	R	S	K	R	G	A	V	V	G	G	G	L	L	.	.	.	.	.	.	.	.	.	G	L	E	A	A	G	A	L	K	N	L	G	I	E	T	H	V	I	E	F	A	P
Query Conservation		.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Q	Y	V	S	E	W	D	A	N	K	R	N	T	W	D	N	L	D	P	Y	K	L	T	M	L	E	I	Y	K	H	F	N	L	C	Q	L	T	I	D	F	L	G	H	A	V	A	L	Y	L	N	D	D	Y	L	K	Q	P	A	Y	L	T	L	E	R	I	K	L	Y	M	Q	S	I	S	A	F	G	K	S	P
Template Known Secondary structure										T	T		G	G	G	S	T	T			T	T	T	S	B								T	T													T	S			S	S	S	G	G	G	G	S	B																			S	S		S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	M	A	E	Q	L	D	Q	M	G	G	E	Q	L	R	R	K	I	E	S	M	G	V	R	V	H	T	S	K	N	T	L	E	I	V	Q	E	G	V	E	A	R	K	T	M	R	F	A	D	G	S	E	L	E	V	D	F	I	V	F	S	T	G	I	R	P	R
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		F	I	Y	P	L	Y	G	L	G	G	I	P	E	G	F	S	R	M	C	A	.	.	I	N	T	F	M	L	N	K	N	V	V	D	F	V	F	D	D	D	N	K	V	C	G	I	K	S	S	D	G	E	I	A	Y	C	D	K	V	I	C	D	P	S	Y	V	M	H
Template Known Secondary structure						T	T		T	T												.	.						S	S										T	T	S								T	T	S												G	G	G		T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions