Job Description P08201 Confidence 100.00% Date Thu Jan 5 11:00:55 GMT 2012 Rank 21 Aligned Residues 377 % Identity 25% Template c3kljA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		S	K	V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	R	I	A	Y	D	R	V	H	L	S	S	Y	F	S	H	H	.	T	A	E	E	L	S	L	V	R	E	G	F	Y	E	K	H	G	I	K	V	L	V	G	E
Query Conservation																																																									.
Alig confidence																											.	.	.	.																											.
Template Conservation																											.	.	.	.
Template Sequence		K	S	T	K	I	L	I	L	G	A	G	P	A	G	F	S	A	A	K	A	A	L	G	K	C	.	.	.	.	D	D	I	T	M	I	N	S	E	K	Y	L	P	Y	Y	R	P	R	L	N	E	I	I	A	K	N	K	S	I	D	D	I	L	I	K	K	N	D	W	Y	E	K	N	N	I	K	V	I	T	S	E
Template Known Secondary structure			B		S							S											T	T	T		.	.	.	.	S							S	S	S	S			B		G	G	G							S				G	G	G	T	B	S	S								T	T						S
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	I	T	I	N	R	Q	E	K	V	I	H	S	S	A	G	R	T	V	F	Y	D	K	L	I	M	A	T	G	S	Y	P	W	I	P	P	I	K	G	S	D	T	Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	S	C	A	R	R	S	K	R	G	A	V	V	G	G	G	L	L	G	L	E	A
Query Conservation
Alig confidence																																										.	.
Template Conservation																																										.	.
Template Sequence		F	A	T	S	I	D	P	N	N	K	L	V	T	L	K	S	G	E	K	I	K	Y	E	K	L	I	I	A	S	G	S	I	A	N	K	I	K	V	P	H	.	.	A	D	E	I	F	S	L	Y	S	Y	D	D	A	L	K	I	K	D	E	C	K	N	K	G	K	A	F	I	I	G	G	G	I	L	G	I	E	L
Template Known Secondary structure								T	T	T	T					T	T	S						S																T	T	.	.		S						S	S															S								S
Template Predicted Secondary structure																																										.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	A	L	K	N	L	G	I	E	T	H	V	I	E	F	A	P	M	L	M	A	E	Q	L	D	Q	M	G	G	E	Q	L	R	R	K	I	E	S	M	G	V	R	V	H	T	S	K	N	T	L	E	I	V	Q	E	G	V	E	A	R	K	T	M	R	F	A	D	G	S	E	L	E	V	D	F	I	V	F	S
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	A	I	I	D	S	G	T	P	A	S	I	G	I	I	L	E	Y	P	L	E	R	Q	L	D	R	D	G	G	L	F	L	K	D	K	L	D	R	L	G	I	K	I	Y	T	N	S	N	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	M	G	D	L	I	R	S	S	C	V	I	T	A
Template Known Secondary structure									T								S	S	S	S	S		T	T	T	S														T	T	T						S			G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G								S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.																.	.	.	210	.	.	.	.	.	.	.	.	.	220
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	I	R	P	R	D	K	L	A	T	Q	C	G	L	D	V	A	P	R	G	G	I	V	I	N	D	S	C	Q	T	S	D	P	D	I	Y	A	I	G	E	C	A	S	W	N	N	R	V	F	G	L	V	A	P	G	Y	K	M	A	Q	V	A	V	D	H	I	L	G	S	E	N	A	F	E	G	A	D	L	S
Query Conservation
Alig confidence																				.	.
Template Conservation																				.	.
Template Sequence		V	G	V	K	P	N	L	D	F	I	K	D	T	E	I	A	S	K	.	.	R	G	I	L	V	N	D	H	M	E	T	S	I	K	D	I	Y	A	C	G	D	V	A	E	F	Y	G	K	N	P	G	L	I	N	I	A	N	K	Q	G	E	V	A	G	L	N	A	C	G	E	D	A	S	Y	S	E	I	I	P	S
Template Known Secondary structure									G	G	G	T	T	S				B	S	.	.	S	S					T	T		B		S	S	T	T					G	G	G				T	T	B																				T	T
Template Predicted Secondary structure																				.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	L	K	L	L	G	V	D	V	G	G	I	G	D	A	H	G	R	T	P	G	A	R	S	Y	V	Y	L	D	E	S	K	E	I	Y	K	R	L	I	V	S	E	D	N	K	T	L	L	G	A	V	L	V	G	D	T	S	D	Y	G	N	L	L	Q	L	V	L	N	A	I	E	L	P	E	N	P	D	S	L
Query Conservation
Alig confidence																						.	.	.																						.	.
Template Conservation																						.	.	.																						.	.
Template Sequence		P	I	L	K	V	S	G	I	S	I	I	S	C	G	D	I	E	N	N	K	.	.	.	P	S	K	V	F	R	S	T	Q	E	D	K	Y	I	V	C	M	L	K	E	N	.	.	K	I	D	A	A	A	V	I	G	D	V	S	L	G	T	K	L	K	K	A	I	D	S	S	K	S	F	D	N	I	S	S	L	D
Template Known Secondary structure							T	T							S			T	T			.	.	.		S								S	S									T	T	.	.									S														T	T		B		S			S
Template Predicted Secondary structure																						.	.	.																						.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		401	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	P	A	H	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	L	N	N	L
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions