Job Description P08201 Confidence 100.00% Date Thu Jan 5 11:00:55 GMT 2012 Rank 15 Aligned Residues 386 % Identity 23% Template c3kd9B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii Resolution 2.75 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K	V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	R	I	A	Y	D	R	V	H	L	S	S	Y	F	S	H	H	T	A	E	E	L	S	L	V	R	E	G	F	Y	E	K	H	G	I	K	V	L	V	G	E
Query Conservation
Alig confidence				.	.																								.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.																								.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	.	.	K	V	V	I	I	G	G	G	A	A	G	M	S	A	A	S	R	V	K	R	L	K	P	.	.	E	W	D	V	K	V	F	E	A	T	E	W	V	S	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	K	K	R	G	I	D	L	H	L	N	A
Template Known Secondary structure				.	.								S															T	.	.	T	S							S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T					T						T
Template Predicted Secondary structure				.	.																								.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.			.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																							.	.	.	.	.	.	50	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																					.																																														.	.
Query SS confidence																					.																																														.	.
Query Sequence		R	A	I	T	I	N	R	Q	E	K	V	I	H	S	S	A	G	R	T	.	V	F	Y	D	K	L	I	M	A	T	G	S	Y	P	W	I	P	P	I	K	G	S	D	T	Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	S	C	A	R	R	.	.	S	K	R	G	A	V	V	G	G	G	L	L	G
Query Conservation																					.																																														.	.
Alig confidence																					.																																														.	.
Template Conservation
Template Sequence		E	V	I	E	V	D	T	G	Y	V	R	V	R	E	N	G	G	E	K	S	Y	E	W	D	Y	L	V	F	A	N	G	A	S	P	Q	V	P	A	I	E	G	V	N	L	K	G	V	F	T	A	D	L	P	P	D	A	L	A	I	R	E	Y	M	E	K	Y	K	V	E	N	V	V	I	I	G	G	G	Y	I	G
Template Known Secondary structure								T	T							T	T								S															S	B				S	T	T				S		S												T	T	S											S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	A	A	G	A	L	K	N	L	G	I	E	T	H	V	I	E	F	A	P	M	L	M	A	E	Q	L	D	Q	M	G	G	E	Q	L	R	R	K	I	E	S	M	G	V	R	V	H	T	S	K	N	T	L	E	I	V	Q	E	G	V	E	A	R	K	T	M	R	F	A	D	G	S	E	L	E	V	D	F	I
Query Conservation
Alig confidence																												.																																					.	.	.
Template Conservation																												.																																					.	.	.
Template Sequence		I	E	M	A	E	A	F	A	A	Q	G	K	N	V	T	M	I	V	R	G	E	R	V	L	R	R	.	S	F	D	K	E	V	T	D	I	L	E	E	K	L	K	K	H	V	N	L	R	L	Q	E	I	T	M	K	I	E	G	E	E	R	V	E	.	.	.	K	V	V	T	D	A	G	E	Y	K	A	E	L	V
Template Known Secondary structure										T	T	T								S	S	S	S	T	T	T	T	.	T	S													T	T	T	S					S								B	S	S	S	B		.	.	.					T	T						S
Template Predicted Secondary structure																												.																																					.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.							290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																																						.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.
Query Sequence		V	F	S	T	G	I	R	P	R	D	K	L	A	T	Q	C	G	L	D	V	A	P	R	G	G	I	V	I	N	D	S	C	Q	T	S	D	P	D	I	Y	A	I	G	E	C	A	S	W	N	N	R	V	.	.	.	.	.	.	F	G	L	V	A	P	G	Y	K	M	A	Q	V	A	V	D	H	I	L	G	S	E
Query Conservation																																																						.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	A	T	G	I	K	P	N	I	E	L	A	K	Q	L	G	V	R	I	G	E	T	G	A	I	W	T	N	E	K	M	Q	T	S	V	E	N	V	Y	A	A	G	D	V	A	E	T	R	H	V	I	T	G	R	R	V	W	V	P	L	A	P	A	G	N	K	M	G	Y	V	A	G	S	N	I	A	G	K	E
Template Known Secondary structure					S											T	T	T			B		T	T	S	S	B				T	T		B		S	S	T	T					G	G	G	B				B	T	T	T		S																						T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.											.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.																		.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence																												.	.																		.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		N	A	F	E	G	A	D	L	S	A	K	L	K	L	L	G	V	D	V	G	G	I	G	D	A	H	.	.	G	R	T	P	G	A	R	S	Y	V	Y	L	D	E	S	K	E	.	.	.	.	.	.	.	.	.	.	I	Y	K	R	L	I	V	S	E	D	N	K	T	L	L	G	A	V	L	V	G	D	T	S	.
Query Conservation																												.	.																		.	.	.	.	.	.	.	.	.	.																									.
Alig confidence																												.	.																		.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		L	H	F	P	G	V	L	G	T	A	V	T	K	F	M	D	V	E	I	G	K	T	G	L	T	E	M	E	A	L	K	E	G	Y	D	V	R	T	A	F	I	K	A	S	T	R	P	H	Y	Y	P	G	G	R	E	I	W	L	K	G	V	V	D	N	E	T	N	R	L	L	G	V	Q	V	V	G	S	D	I	L
Template Known Secondary structure							B									T	T																T	T												S	S		S	S	S	T	T												T	T	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
			379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	Y	G	N	L	L	Q	L	V	L	N	A	I	E	L	P	E	N	P	D	S	L	I	L	P	A	H	S	G	S	G	K	P	S	I	G	V	D
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		P	R	I	D	T	A	A	A	M	L	M	A	G	F	T	T	K	D	A	F	F	T	D	L	A	Y	A	P	P	F	A	P	V	W	D	P	L	I	V
Template Known Secondary structure														T		B						T	S					B	T	T	T	B		S	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.