Job Description P08201 Confidence 100.00% Date Thu Jan 5 11:00:55 GMT 2012 Rank 43 Aligned Residues 373 % Identity 17% Template c3ic9D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h. Resolution 2.15 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																										.	.	.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	K	V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	R	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	R	V	H	L	S	S	Y	F	S	H
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.
Template Sequence		V	I	N	V	D	V	A	I	I	G	T	G	T	A	G	X	G	A	Y	R	A	A	K	K	H	T	.	.	.	.	D	K	V	V	L	I	E	G	G	A	Y	G	T	T	C	A	R	V	G	C	X	P	S	K	L	L	I	A	A	A	D	A	S	Y	H	A	S	Q	T	D	L	F	G	I	Q	V	D	R	I	S
Template Known Secondary structure													S												T	T		.	.	.	.	S							S	S		S	S							S																		T		G	G	G	G	T				S
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.													.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	T	A	E	E	L	S	L	V	R	E	G	F	Y	E	K	.	.	.	.	.	.	.	.	.	.	.	.	H	G	I	K	V	L	V	G	E	R	A	I	T	I	N	R	Q	E	K	V	I	H	S	S	A	G	R	T	V	F	Y	D	K	L	I	M	A	T	G	S	Y	P	W	I	P	P	I	K	G	S	D	T
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																																												.	.	.
Template Sequence		V	N	G	K	A	V	X	K	R	I	Q	T	E	R	D	R	F	V	G	F	V	V	E	S	V	E	S	F	D	E	Q	D	K	I	R	G	F	A	K	F	L	D	.	.	.	E	H	T	L	Q	V	D	D	H	S	Q	V	I	A	K	R	I	V	I	A	T	G	S	R	P	N	Y	P	E	F	L	A	A	A	G
Template Known Secondary structure																													S		G	G	G				S							.	.	.	T	T					T	T	T																								T	T	G
Template Predicted Secondary structure																																												.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	S	C	A	R	R	S	K	R	G	A	V	V	G	G	G	L	L	G	L	E	A	A	G	A	L	K	N	L	G	I	E	T	H	V	I	E	F	A	P	M	L	M	A	E	Q	L	D	Q	M	G	G	E	Q	L	R	R	K	I	E	S	M	G	V	R
Query Conservation
Alig confidence						.	.	.	.	.	.																																																			.
Template Conservation						.	.	.	.	.	.																																																			.
Template Sequence		S	R	L	L	.	.	.	.	.	.	T	N	D	N	L	F	E	L	N	D	L	P	K	S	V	A	V	F	G	P	G	V	I	G	L	E	L	G	Q	A	L	S	R	L	G	V	I	V	K	V	F	G	R	S	G	S	V	A	N	L	.	Q	D	E	E	X	K	R	Y	A	E	K	T	F	N	E	E	F	Y	F
Template Known Secondary structure		G	G			.	.	.	.	.	.						T	T		S	S			S								S													T	T								S	S	S			T	T		.		S													T	T	S
Template Predicted Secondary structure						.	.	.	.	.	.																																																			.
Template SS confidence
		156	.	.	.							160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.																									.	.																				.
Query SS confidence																								.																									.	.																				.
Query Sequence		V	H	T	S	K	N	T	L	E	I	V	Q	E	G	V	E	A	R	K	T	M	R	.	F	A	D	G	S	E	L	E	V	D	F	I	V	F	S	T	G	I	R	P	R	D	K	L	.	.	A	T	Q	C	G	L	D	V	A	P	R	G	G	I	V	I	N	D	S	.	C	Q	T	S	D	P	D	I	Y	A	I
Query Conservation																								.																									.	.																				.
Alig confidence																								.																									.	.																				.
Template Conservation
Template Sequence		D	A	K	A	R	V	I	S	T	I	E	K	E	D	A	V	E	V	I	Y	F	D	K	S	G	Q	K	T	T	E	S	F	Q	Y	V	L	A	A	T	G	R	K	A	N	V	D	K	L	G	L	E	N	T	S	I	E	L	D	K	K	N	S	P	L	F	D	E	L	T	L	Q	T	S	V	D	H	I	F	V	A
Template Known Secondary structure			T	T										S	S	S								T	T	S								S						S					T	T	S	S	S		G	G	G	S				B		T	T	S		B		B		T	T	T		B	B	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.								.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																											.																			.	.	.	.	.	.	.
Query SS confidence																																											.																			.	.	.	.	.	.	.
Query Sequence		G	E	C	A	S	W	N	N	R	V	F	G	L	V	A	P	G	Y	K	M	A	Q	V	A	V	D	H	I	L	G	S	E	N	A	F	E	G	A	D	L	S	.	A	K	L	K	L	L	G	V	D	V	G	G	I	G	D	A	H	G	.	.	.	.	.	.	.	R	T	P	G	A	R	S	Y	V	Y	L	D	E
Query Conservation																																											.																			.	.	.	.	.	.	.
Alig confidence							.	.	.	.																																	.																			.	.	.	.	.	.	.
Template Conservation							.	.	.	.
Template Sequence		G	D	A	N	N	.	.	.	.	T	L	T	L	L	H	E	A	A	D	D	G	K	V	A	G	T	N	A	G	A	Y	P	V	I	A	Q	G	Q	R	R	A	P	L	S	V	V	F	T	E	P	Q	V	A	S	V	G	L	S	L	R	Q	I	E	D	L	Y	A	D	Q	D	A	A	N	Y	V	V	G	Q	V	S
Template Known Secondary structure		G	G	G	G	T	.	.	.	.	S	S		S																		T	T	S															S	S	S							S											T	S	S	S
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		309	310	.	.	.					.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		352												.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		S	.	.	.	.	.	.	.	.	.	.	.	K	E	I	Y	K	R	L	I	V	S	E	D	N	K	T	L	L	G	A	V	L	V	G	.	D	T	S	D	Y	G	N	L	L	Q	L	V	L	N	A	I
Query Conservation			.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation
Template Sequence		F	E	G	Q	G	R	S	R	V	X	G	K	N	K	G	L	L	N	V	Y	A	D	R	T	S	G	E	F	L	G	A	E	X	F	G	P	A	A	E	H	I	G	H	L	L	A	W	A	R	Q	Q	Q
Template Known Secondary structure		G	G	G							T	T												T	T	T		B									T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.