Phyre 2 alignment of P08201 with c3h8lA

Job Description P08201
Confidence 99.96% Date Thu Jan 5 11:00:55 GMT 2012

Rank 77 Aligned Residues 294

% Identity 15% Template c3h8lA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: the first x-ray structure of a sulfide:quinone2 oxidoreductase: insights into sulfide oxidation mechanism

Resolution 2.57 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	R	I	A	Y	D	R	V	H	L	S	S	Y	F	S	H	H	T	A	E	E	L	S	L	V	R	E	G	F	Y	E	K	H	G	I	K	V	L	V	G	E	R	A	I
Query Conservation
Alig confidence																											.																																																	.
Template Conservation																											.																																																	.
Template Sequence	T	K	V	L	V	L	G	G	R	F	G	A	L	T	A	A	Y	T	L	K	R	L	V	G	S	K	.	A	D	V	K	V	I	N	K	S	R	F	S	Y	F	R	P	A	L	P	H	V	A	I	G	V	R	D	V	D	E	L	K	V	D	L	S	E	A	L	P	E	K	G	I	Q	F	Q	E	.	G	T	V	E
Template Known Secondary structure								S	S															G	G	G	.	S							S	S	S							S	S					S	S															T	G	G	G	T						.
Template Predicted Secondary structure																											.																																																	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.

	84	.	.	.	.	.	90	.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure															.	.	.	.																																																							.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.																																																							.	.	.	.	.	.	.	.
Query Sequence	T	I	N	R	Q	E	K	V	I	H	S	S	A	G	.	.	.	.	R	T	V	F	Y	D	K	L	I	M	A	T	G	S	Y	P	W	I	P	P	I	K	G	S	D	T	Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	S	C	A	R	R	S	K	R	G	A	V	V	.	.	.	.	.	.	.	.
Query Conservation															.	.	.	.																																																							.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																									.																														.	.	.	.	.	.	.	.
Template Conservation																																											.
Template Sequence	K	I	D	A	K	S	S	M	V	Y	Y	T	K	P	D	G	S	M	A	E	E	E	Y	D	Y	V	I	V	G	I	G	A	H	L	A	T	E	L	V	K	G	W	.	D	K	Y	G	Y	S	V	C	E	P	E	F	A	T	K	L	R	E	K	L	E	S	F	Q	G	G	N	I	A	I	G	S	G	P	F	Y	Q
Template Known Secondary structure				T	T	T	T							T	T	S								S												G	G	G	S	B	T		.							S	S	S	T	T														S										B
Template Predicted Secondary structure																																											.
Template SS confidence
	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

																			152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	L	L	G	L	E	A	A	G	A	L	K	N	L	.	.	.	.	.	.	G	I	E	T	H	V	I	E	F	A	P	M	L	M	A	E	Q	L	D	Q	M	G	G	E	Q	L	R	R	K	I	E	S	M	G	V	R	V	H	T	S
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation
Template Sequence	G	H	N	P	K	P	K	V	P	E	N	F	V	P	N	A	D	S	A	C	E	G	P	V	F	E	M	S	L	M	L	H	G	Y	F	K	K	K	G	M	L	D	K	V	H	V	T	V	F	S	P	G	E	Y	L	S	D	L	S	P	N	S	R	K	A	V	A	S	I	Y	N	Q	L	G	I	K	L	V	H	N
Template Known Secondary structure			S	S			B	S		T	T	S	S				S		S	S																	T	T	T		T	T	T								S	S	S	S	S	T	T	S																T						S
Template Predicted Secondary structure
Template SS confidence
	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

	208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence	K	N	T	L	E	I	V	Q	E	G	V	E	A	R	K	T	M	R	F	A	D	G	S	E	L	E	V	D	F	I	V	F	S	T	G	I	R	P	R	D	K	L	A	T	Q	C	G	L	D	V	A	P	R	G	G	I	V	I	N	D	S	C	Q	.	T	S	D	P	D	I	Y	A	I	G	E	C	A	S	W	N
Query Conservation																																																																.
Alig confidence										.	.	.	.	.	.																																																	.
Template Conservation										.	.	.	.	.	.
Template Sequence	F	K	I	K	E	I	R	E	H	.	.	.	.	.	.	E	I	V	D	E	K	G	N	T	I	P	A	D	I	T	I	L	L	P	P	Y	T	G	N	P	A	L	K	N	S	T	P	D	L	V	D	D	G	G	F	I	P	T	D	L	N	M	V	S	I	K	Y	D	N	V	Y	A	V	G	D	A	N	S	M	T
Template Known Secondary structure								S	S	.	.	.	.	.	.					T	T	S						S																T	S		G	G	G	S		T	T	S		B		B	B	T	T	S	B	B	S	S		T	T					G	G	G	B	T	T
Template Predicted Secondary structure										.	.	.	.	.	.
Template SS confidence
	239	240	.	.	.	.	.	.	.							.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	R	V	F	G	L	V	A	P	G	Y	K	M	A	Q	V	A	V	D	H	I	L
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence	V	P	K	.	.	L	G	Y	L	A	V	M	T	G	R	I	A	A	Q	H	L	A
Template Known Secondary structure		S		.	.
Template Predicted Secondary structure				.	.
Template SS confidence
	313	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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