Job Description P08201 Confidence 93.53% Date Thu Jan 5 11:00:55 GMT 2012 Rank 369 Aligned Residues 131 % Identity 14% Template c3eagA_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso- PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides Resolution 2.55 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	.	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	R	I	A	Y	D	R	V	H	L	S	S	Y	F	S	H	H	T	A	E	E	L	S	L	V	R	E	G	F	Y	E	K	H	G	I	K	V	L	V	G	E	R	A
Query Conservation																	.
Alig confidence																	.									.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	H	I	H	I	I	G	I	G	G	T	F	X	G	G	L	A	A	I	A	K	E	A	G	.	.	.	.	F	E	V	S	G	C	D	A	K	X	Y	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	S	T	Q	L	E	A	L	G	I	D	V	Y	E	G	F	D	A
Template Known Secondary structure								S			S													T	T	.	.	.	.								S	S			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T						S			G
Template Predicted Secondary structure																										.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.																						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		I	T	I	N	R	Q	E	K	V	I	H	S	S	A	G	R	T	V	F	Y	D	K	L	I	M	A	T	G	S	Y	P	W	I	P	P	I	K	G	S	D	T	Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	S	C	A	R	R	S	K	R	G	A	V	V	G	G	G	L	.	.	.	.	L	G	L
Query Conservation																																																																											.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.																							.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Sequence		A	Q	L	D	E	F	K	.	.	.	.	.	.	.	.	.	.	.	.	A	D	V	Y	V	I	G	N	V	A	K	R	G	X	D	V	V	E	A	I	L	N	L	G	L	P	Y	I	S	.	.	.	G	P	Q	W	L	S	E	N	V	L	H	H	H	W	V	L	G	V	A	G	T	H	G	K	T	T	T	A	S
Template Known Secondary structure		G	G	G	G	S			.	.	.	.	.	.	.	.	.	.	.	.		S						T	T			T	T										T	T						.	.	.									T	G	G	G	S							S	S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template SS confidence
		57	.	.	60	.	.	.													.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	A	G	A	L	K	N	L	G	I	E	T	H	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	L	A	W	V	L	E	Y	A	G	L	A	P	G	F	L
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions