Job Description P08201 Confidence 99.94% Date Thu Jan 5 11:00:55 GMT 2012 Rank 89 Aligned Residues 292 % Identity 16% Template c3d8xB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1 Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.											.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	K	V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	R	I	A	Y	D	R	V	H	.	.	.	.	.	.	.	.	.	.	L	S	S	Y	F	S	H	H	T	A	E	E	L	S	L	V	R	E	G	F	Y	E
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.
Alig confidence					.																							.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation					.																							.	.	.	.
Template Sequence		V	H	N	.	K	V	T	I	I	G	S	G	P	A	A	H	T	A	A	I	Y	L	A	R	A	E	.	.	.	.	I	K	P	I	L	Y	E	G	M	M	A	N	G	I	A	A	G	G	Q	L	T	T	T	T	E	I	E	N	F	P	G	F	P	D	G	L	T	G	S	E	L	M	D	R	M	R	E	Q	S	T
Template Known Secondary structure					.								S													T	T	.	.	.	.									S	S	G	G	G			T	T		G	G	G	G		S					S	T	T		T	T
Template Predicted Secondary structure					.																							.	.	.	.
Template SS confidence
		2	.	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		K	H	G	I	K	V	L	V	G	E	R	A	I	T	I	N	R	Q	E	K	V	I	H	.	.	.	.	S	S	A	G	R	T	V	F	Y	D	K	L	I	M	A	T	G	S	Y	P	W	I	P	P	I	K	G	S	D	T	Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	S	C	A	R	R	S	K
Query Conservation																									.	.	.	.
Alig confidence																									.	.	.	.																																																		.
Template Conservation																																																																														.
Template Sequence		K	F	G	T	E	I	I	T	E	T	V	S	K	V	D	L	S	S	K	P	F	K	L	W	T	E	F	N	E	D	A	E	P	V	T	T	D	A	I	I	L	A	T	G	A	S	A	K	R	M	H	L	P	G	E	E	T	Y	W	Q	K	G	I	S	A	C	A	V	C	D	G	A	V	P	I	F	.	R	N	K
Template Known Secondary structure			T	T														S	S	S	S						T	T		T	T	S																						T	T					B	T	T	T			S						T	T	S	G	G	G	.	T	T	S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	A	V	V	G	G	G	L	L	G	L	E	A	A	G	A	L	K	N	L	G	I	E	T	H	V	I	E	F	A	P	M	L	M	A	E	Q	L	D	Q	M	G	G	E	Q	L	R	R	K	I	E	S	M	G	V	R	V	H	T	S	K	N	T	L	E	I	V	Q	E	G	V	E	A	R	K	T	M	R	F
Query Conservation
Alig confidence																																							.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.
Template Sequence		P	L	A	V	I	G	G	G	D	S	A	C	E	E	A	Q	F	L	T	K	Y	G	S	K	V	F	M	L	V	R	K	D	H	L	R	A	S	.	.	.	.	.	.	T	I	M	Q	K	R	A	E	K	N	E	K	I	E	I	L	Y	N	T	V	A	L	E	A	K	G	D	G	K	L	L	N	A	L	R	I	K
Template Known Secondary structure								S	S											T	T	T	S	S							S	S	S	S			S		.	.	.	.	.	.											T	T						S									S	S	S	S
Template Predicted Secondary structure																																							.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.							.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
						227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	A	D	G	S	E	L	E	V	D	F	I	V	F	S	T	G	I	R	P	R	D	K	L	A	T	Q	C	G	L	D	V	A	P	R	G	G	I	V	I	N	D	S	C	Q	T	S	D	P	D	I	Y	A	I	G	E	C	A	S	W	N	N	R	V	F	G	L	V	A	P	G	Y	K	M	A	Q	V
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																																										.	.	.
Template Conservation																																																															.	.	.
Template Sequence		N	T	K	K	N	E	E	T	D	L	P	V	S	G	L	F	Y	A	I	G	H	T	P	A	T	K	I	V	A	G	Q	V	D	T	D	E	A	G	Y	I	K	T	V	P	G	S	S	L	T	S	V	P	G	F	F	A	A	G	D	V	Q	.	.	.	D	S	K	Y	R	Q	A	I	T	S	A	G	S	G	C	M
Template Known Secondary structure			T	T	T	T								S						S							G	G	G	T	T	T	S		B		T	T	S		B				T	T	S				S	S	T	T					G	G	G	G	.	.	.		S	S
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		303	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	D	H	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	L	D	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions