Job Description P08201 Confidence 99.95% Date Thu Jan 5 11:00:55 GMT 2012 Rank 80 Aligned Residues 284 % Identity 16% Template c2vdcI_ PDB info PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Resolution 9.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	R	I	A	Y	D	R	V	H	L	S	S	Y	F	S	H	H	T	A	E	E	L	S	L	V	R	E	G	F	Y	E	K	H	G	I	K	V	L	V	G	E	R
Query Conservation
Alig confidence																											.	.	.	.															.	.																																			.
Template Conservation																											.	.	.	.															.	.																																			.
Template Sequence		L	G	L	S	V	G	V	I	G	A	G	P	A	G	L	A	A	A	E	E	L	R	A	K	G	.	.	.	.	Y	E	V	H	V	Y	D	R	Y	D	R	M	G	G	.	.	L	L	V	Y	G	I	P	G	F	K	L	E	K	S	V	V	E	R	R	V	K	L	L	A	D	A	G	V	I	Y	H	P	N	F	.
Template Known Secondary structure												S														T	.	.	.	.								S	S	S	S		S	T	.	.					T	S		T	T	T	S															T	T					T	T		.
Template Predicted Secondary structure																											.	.	.	.															.	.																																			.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.													140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	T	I	N	R	Q	E	K	V	I	H	S	S	A	G	R	T	V	F	Y	D	K	L	I	M	A	T	G	S	Y	.	P	W	I	P	P	I	K	G	S	D	T	Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	.	.	.	.	.	.	.	.	.	.	.	.	S	C	A	R	R	S	K	R	G
Query Conservation																																	.																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.															.	.	.	.												.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.															.	.	.	.
Template Sequence		.	.	E	V	G	R	D	A	S	L	P	E	L	R	R	K	.	.	.	.	H	V	A	V	L	V	A	T	G	V	Y	K	A	R	D	I	K	A	P	G	S	G	L	G	N	I	V	A	A	L	D	Y	L	T	T	S	N	K	V	S	L	G	D	T	V	E	A	Y	E	N	G	S	L	N	A	A	G	K	H	V
Template Known Secondary structure		.	.		B	T	T	T	B							S	S	.	.	.	.		S														T	T		S			T	T	T	T																	T	T	T		S	S			T	T		S					S
Template Predicted Secondary structure		.	.															.	.	.	.
Template SS confidence
				219	220	.	.	.	.	.	.	.	.	.	230	.	.					.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.																																																			.	.	.	.	.	.	.	.
Query SS confidence																							.																																																			.	.	.	.	.	.	.	.
Query Sequence		A	V	V	G	G	G	L	L	G	L	E	A	A	G	A	L	K	N	L	G	I	.	E	T	H	V	I	E	F	A	P	M	L	M	A	E	Q	L	D	Q	M	G	G	E	Q	L	R	R	K	I	E	S	M	G	V	R	V	H	T	S	K	N	T	L	E	I	V	Q	E	G	V	E	.	.	.	.	.	.	.	.
Query Conservation																							.																																																			.	.	.	.	.	.	.	.
Alig confidence																							.																					.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		V	V	L	G	G	G	D	T	A	M	D	C	V	R	T	A	I	R	Q	G	A	T	S	V	K	C	L	Y	R	R	D	R	K	N	M	P	G	S	Q	R	E	V	.	.	.	.	.	A	H	A	E	E	E	G	V	E	F	I	W	Q	A	A	P	E	G	F	T	G	D	T	V	V	T	G	V	R	A	V	R	I
Template Known Secondary structure						S	S													T	T		S							S	S		S	T	T		S	S						.	.	.	.	.						T	T							S	S	S											T	T
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.						.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
												220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																														.	.																				.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																														.	.																				.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	R	K	T	M	R	F	A	D	G	S	E	L	E	V	D	F	I	V	F	S	T	G	I	R	P	R	D	K	.	.	L	A	T	Q	C	G	L	D	V	A	P	R	G	G	I	V	I	N	D	.	S	C	Q	T	S	D	P	D	I	Y	A	I	G	E	C	A	S	W	N
Query Conservation		.	.	.	.	.	.	.	.	.	.																														.	.																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.																														.	.																				.
Template Conservation
Template Sequence		H	L	G	V	A	D	A	T	G	R	Q	T	P	Q	V	I	E	G	S	E	F	T	V	Q	A	D	L	V	I	K	A	L	G	F	E	P	E	D	L	P	N	A	F	D	E	P	E	L	K	V	T	R	W	G	T	L	L	V	D	H	R	T	K	M	T	N	M	D	G	V	F	A	A	G	D	I	V	R	G	A
Template Known Secondary structure										T	T																S						S													S	T	T	S		B		T	T	S	S	B				T	T	T		B		S	S	T	T					G	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	V	F	G	L	V	A	P	G	Y	K	M	A	Q	V	A	V	D	H	I
Query Conservation
Alig confidence			.	.	.	.
Template Conservation			.	.	.	.
Template Sequence		S	.	.	.	.	L	V	V	W	A	I	R	D	G	R	D	A	A	E	G	I
Template Known Secondary structure			.	.	.	.	S
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		448					.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions