Job Description P08201 Confidence 100.00% Date Thu Jan 5 11:00:55 GMT 2012 Rank 5 Aligned Residues 225 % Identity 17% Template c2akjA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast; PDBTitle: structure of spinach nitrite reductase Resolution 2.80 Å

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		549	550	.	.	.	.	.	.	.	.	.	560					.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.			.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
Predicted Secondary structure														.	.	.	.																																	.	.
Query SS confidence														.	.	.	.																																	.	.
Query Sequence		Q	D	S	N	D	N	F	L	A	N	I	Q	.	.	.	.	K	D	G	T	Y	S	V	I	P	R	S	P	G	G	E	I	T	P	E	G	L	M	A	V	G	R	I	A	R	E	F	N	.	.	L	Y	T	K	I	T	G	S	Q	R	L	A	M	F	G	A	Q	K	D	D	L	P	E	I	W	R	Q	L	I	E
Query Conservation														.	.	.	.																																	.	.
Alig confidence														.	.	.	.																																	.	.
Template Conservation
Template Sequence		I	D	V	R	L	K	W	L	G	L	F	H	R	R	K	H	H	Y	G	R	F	M	M	R	L	K	L	P	N	G	V	T	T	S	E	Q	T	R	Y	L	A	S	V	I	K	K	Y	G	K	D	G	C	A	D	V	T	T	R	Q	N	W	Q	I	R	G	V	V	L	P	D	V	P	E	I	I	K	G	L	E	S
Template Known Secondary structure				T	G	G	G	G	G	T									T	T									G	G	G																T	T	G	G	G							T	T	S									G	G	G										T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.									.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.
Query Sequence		A	G	F	E	T	G	H	A	Y	A	K	A	L	R	M	A	K	T	C	V	G	S	T	W	C	R	Y	G	V	G	D	S	V	G	L	G	V	E	L	E	N	R	Y	K	.	.	.	.	.	.	.	.	G	I	R	T	P	H	K	M	K	F	G	V	S	G	C	T	R	E	C	S	E	A	Q	G	K	D	V	G
Query Conservation																																														.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	L	T	S	L	Q	S	G	M	D	N	V	R	N	P	V	G	N	P	L	A	G	I	D	P	H	E	I	V	D	T	R	P	F	T	N	L	I	S	Q	F	V	T	A	N	S	R	G	N	L	S	I	T	N	L	P	R	K	W	N	P	C	V	I	G	S	H	D	L	Y	E	H	P	H	I	N	D	L	A
Template Known Secondary structure		T	T				T	T		S	S	S	S	B				B			T	T	T	T	T		T	T		S	S														T	T	T	T	T			G	G	G	S			S	S		B								T	T		T	T		G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		695	.	.	.	.	700					.	.	.	.	.	.	.	.	.	710	.		.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.			.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.												.																																															.	.
Query SS confidence								.	.	.	.												.																																															.	.
Query Sequence		I	I	A	T	E	K	.	.	.	.	G	W	N	L	Y	V	C	G	N	G	G	.	M	K	P	R	H	A	D	L	L	A	A	D	I	D	R	E	T	L	I	K	Y	L	D	R	F	M	M	F	Y	I	R	T	A	D	K	L	T	R	T	A	P	W	L	E	N	L	.	.	E	G	G	I	D	Y	L	K	A	V
Query Conservation								.	.	.	.												.																																															.	.
Alig confidence								.	.	.	.												.																																															.	.
Template Conservation
Template Sequence		Y	M	P	A	T	K	N	G	K	F	G	F	N	L	L	V	G	G	F	F	S	I	K	R	C	E	E	A	I	P	L	D	A	W	V	S	A	E	D	V	V	P	V	C	K	A	M	L	E	A	F	R	D	L	G	F	R	G	N	R	Q	K	C	R	M	M	W	L	I	D	E	L	G	M	E	A	F	R	G	E
Template Known Secondary structure							S	S	S	S													S	S														G	G	G																			S	S	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		768	.	770	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	D	D	K	L	G
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		V	.	E	K	R	M	P
Template Known Secondary structure			.		T	T	S	T
Template Predicted Secondary structure			.
Template SS confidence
		326		.	.	.	330	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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