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Job DescriptionP08201
Confidence100.00%DateThu Jan 5 11:00:55 GMT 2012
Rank46Aligned Residues392
% Identity19%Templatec2a8xA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40 .....
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Query Sequence  MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RIAYD
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Template Sequence  XTHYDVVVLGAGPGGYVAAIRAAQLG. . . . LSTAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVT
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   1........10.........20...... ...30.........40.........50.........60.........70......
 
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Query Sequence  RVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAG. . RTVFYDKLIMATGSYPWIPPIKGSDT
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Template Sequence  FDYGIAYDRSRKVAEGRVAGVHFLXKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSA
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   77..80.........90.........100.........110.........120.........130.........140.........150......
 
   124.....130.........140.........150.........160.........170.........180.........190.........200...
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Query Sequence  QDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVR
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Template Sequence  NVVT. . . . . . . YEEQILSRELPKSIIIAGAGAIGXEFGYVLKNYGVDVTIVEFLPRALPN. EDADVSKEIEKQFKKLGVT
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   157..160 .........170.........180.........190.........200......... 210.........220........
 
   204.....210.........220...... ...230.........240......... 250.........260.........270.........280
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Query Sequence  VHTSKNTLEIVQEGVEARKTMRF. ADGSELEVDFIVFSTGIRPRDKL. . ATQCGLDVAPRGGIVINDSCQTSDPDIYAIG
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Template Sequence  ILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYXRTNVGHIYAIG
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   229230.........240.........250.........260.........270.........280.........290.........300........
 
   281........290.........300.........310.........320. ........330....... ..340.........350
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Query Sequence  ECASWNNRVFGLVAPGYKMAQVAVDHILGSENAFEGADLSA. KLKLLGVDVGGIGDAH. . GRTPGARSYVYLD. . . . . . .
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Template Sequence  DVNG. . . . LLQLAHVAEAQGVVAAETIAGAETLTLGDHRXLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAK
Template Known Secondary structure  GGG
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   309310.. .......320.........330.........340.........350.........360.........370.........380....
 
   351........360.........370..... ....380.........390.........400........
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Query Sequence  . . . . ESKEIYKRLIVSEDNKTLLGAVLVG. . DTSDYGNLLQLVLNAIELPENPDSLILPAHSGS
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Template Sequence  AHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTXSE
Template Known Secondary structure  T



TTTTTTGGGGTT
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   385....390.........400.........410.........420.........430.........440........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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