Job Description P08201 Confidence 100.00% Date Thu Jan 5 11:00:55 GMT 2012 Rank 32 Aligned Residues 392 % Identity 18% Template c1xdiA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:rv3303c-lpda; PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis Resolution 2.81 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																															.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	K	V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	A	Y	D	R	V	H	L	S
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.																										.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.																										.
Template Sequence		V	T	.	.	R	I	V	I	L	G	G	G	P	A	G	Y	E	A	A	L	V	A	A	T	S	H	P	E	T	.	T	Q	V	T	V	I	D	C	D	G	I	G	G	A	A	V	L	D	D	C	V	P	S	K	T	F	I	A	S	T	G	L	R	T	E	L	R	R	A	P	H	L	G	F	H	K	I	S	L	P
Template Known Secondary structure				.	.								S															T	T	T	.								S	S		T	T						T	S																		T	T	T	T	T	T	T
Template Predicted Secondary structure				.	.																										.
Template SS confidence
		2	.			.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		51	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure								.	.																																			.	.	.	.	.										.	.
Query SS confidence								.	.																																			.	.	.	.	.										.	.
Query Sequence		S	Y	F	S	H	H	.	.	T	A	E	E	L	S	L	V	R	E	G	F	Y	E	K	H	G	I	K	V	L	V	G	E	R	A	I	T	I	N	R	Q	E	K	.	.	.	.	.	V	I	H	S	S	A	G	R	T	.	.	V	F	Y	D	K	L	I	M	A	T	G	S	Y	P	W	I	P	P	I	K	G	S
Query Conservation								.	.																																			.	.	.	.	.										.	.
Alig confidence								.	.																																			.	.	.	.	.										.	.
Template Conservation
Template Sequence		Q	I	H	A	R	V	K	T	L	A	A	A	Q	S	A	D	I	T	A	Q	L	L	S	M	G	V	Q	V	I	A	G	R	G	E	L	I	D	S	T	P	G	L	A	R	H	R	I	K	A	T	A	A	D	G	S	T	S	E	H	E	A	D	V	V	L	V	A	T	G	A	S	P	R	I	L	P	S	A	Q	P
Template Known Secondary structure																									T	T						S							S	S	S			S	S								T	T	S								S														G	G	G
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	S	C	A	R	R	S	K	R	G	A	V	V	G	G	G	L	L	G	L	E	A	A	G	A	L	K	N	L	G	I	E	T	H	V	I	E	F	A	P	M	L	M	A	E	Q	L	D	Q	M	G	G	E	Q	L	R	R	K	I	E	S	M	G
Query Conservation
Alig confidence											.	.	.	.	.	.																																																.
Template Conservation											.	.	.	.	.	.																																																.
Template Sequence		D	G	E	R	I	L	T	W	R	.	.	.	.	.	.	Q	L	Y	D	L	D	A	L	P	D	H	L	I	V	V	G	S	G	V	T	G	A	E	F	V	D	A	Y	T	E	L	G	V	P	V	T	V	V	A	S	Q	D	H	V	L	P	Y	.	E	D	A	D	A	A	L	V	L	E	E	S	F	A	E	R	G
Template Known Secondary structure			S	S	S				G	G	.	.	.	.	.	.	G	G	G	G		S	S			S	S					S		S													T	T								S	S	S	S	S	S			.	S	S														T	T
Template Predicted Secondary structure											.	.	.	.	.	.																																																.
Template SS confidence
		165	.	.	.	.	170	.	.	.							.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		V	R	V	H	T	S	K	N	T	L	E	I	V	Q	E	G	V	E	A	R	K	T	M	R	F	A	D	G	S	E	L	E	V	D	F	I	V	F	S	T	G	I	R	P	R	D	K	.	.	L	A	T	Q	C	G	L	D	V	A	P	R	G	G	I	V	I	N	D	S	C	Q	T	S	D	P	D	I	Y	A	I
Query Conservation																																																	.	.
Alig confidence																						.	.																										.	.
Template Conservation																						.	.
Template Sequence		V	R	L	F	K	N	A	R	A	A	S	V	T	R	T	G	A	G	V	L	.	.	V	T	M	T	D	G	R	T	V	E	G	S	H	A	L	M	T	I	G	S	V	P	N	T	S	G	L	G	L	E	R	V	G	I	Q	L	G	R	G	N	Y	L	T	V	D	R	V	S	R	T	L	A	T	G	I	Y	A	A
Template Known Secondary structure						T	T										S	S	S			.	.				T	T	S						S													S	S	S		T	T	T	T	T				B	T	T	T	B					S	S	S	B		S	S	T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																																												.	.																			.	.
Query SS confidence																																																												.	.																			.	.
Query Sequence		G	E	C	A	S	W	N	N	R	V	F	G	L	V	A	P	G	Y	K	M	A	Q	V	A	V	D	H	I	L	G	S	E	N	A	F	E	G	A	D	L	S	A	K	L	K	L	L	G	V	D	V	G	G	I	G	D	A	H	.	.	G	R	T	P	G	A	R	S	Y	V	Y	L	D	E	S	K	E	I	.	.
Query Conservation																																																												.	.																			.	.
Alig confidence							.	.	.	.																																																		.	.																			.	.
Template Conservation							.	.	.	.
Template Sequence		G	D	C	T	G	.	.	.	.	L	L	P	L	A	S	V	A	A	M	Q	G	R	I	A	M	Y	H	A	L	G	E	G	V	S	P	I	R	L	R	T	V	A	A	T	V	F	T	R	P	E	I	A	A	V	G	V	P	Q	S	V	I	D	A	G	S	V	A	A	R	T	I	M	L	P	L	R	T	N	A	R
Template Known Secondary structure		S	G	G	G	T	.	.	.	.	S		S																	T	T								G	G	G							S	S	S							S								T	S	S									S	T	T	S
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		316	.	.	.	320					.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
											356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.			.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		.	.	.	.	.	.	.	.	.	Y	K	R	L	I	V	S	E	D	N	K	T	L	L	G	A	V	L	V	G	D	.	.	T	S	D	Y	G	N	L	L	Q	L	V	L	N	A	I	E	L	P	E	N	P	D	S	L	I	L	P	A	H	S	G	S
Query Conservation		.	.	.	.	.	.	.	.	.																						.	.
Alig confidence		.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		A	K	M	S	E	M	R	H	G	F	V	K	I	F	C	R	R	S	T	G	V	V	I	G	G	V	V	V	A	P	I	A	S	E	L	I	L	P	I	A	V	A	V	Q	N	R	I	T	V	N	E	L	A	Q	T	L	A	V	Y	P	S	L	S	G
Template Known Secondary structure					T	T		S	S									T	T	T		B									T	T															T		B						T	S				S	S	S	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.