Job Description P08201 Confidence 100.00% Date Thu Jan 5 11:00:55 GMT 2012 Rank 35 Aligned Residues 390 % Identity 17% Template c1ojtA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:surface protein; PDBTitle: structure of dihydrolipoamide dehydrogenase Resolution 2.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	R	I	A	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence		A	E	Y	D	V	V	V	L	G	G	G	P	G	G	Y	S	A	A	F	A	A	A	D	E	G	.	.	.	.	L	K	V	A	I	V	E	R	Y	K	T	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	L	H	N	A	A	V	I	D	E	V	R	H	L	A	A	N	G	I	K	Y	P	E	P	E
Template Known Secondary structure												S													T	T	.	.	.	.								S	S	S		S	S							S																				G	G	G	G	T
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
			46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80												.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure		.																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	R	V	H	L	S	S	Y	F	S	H	H	T	A	E	E	L	S	L	V	R	E	G	F	Y	E	K	H	G	I	K	V	L	V	G	E	.	.	.	.	.	.	.	.	.	.	.	R	A	I	T	I	N	R	Q	E	K	V	I	H	S	S	A	G	R	T	V	F	Y	D	K	L	I	M	A	T	G	S	Y	P
Query Conservation		.																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	I	D	M	L	R	A	Y	K	D	G	V	V	S	R	L	T	G	G	L	A	G	M	A	K	S	R	K	V	D	V	I	Q	G	D	G	Q	F	L	D	P	H	H	L	E	V	S	L	T	A	G	D	A	Y	E	Q	A	A	P	T	G	E	K	K	I	V	A	F	K	N	C	I	I	A	A	G	S	R	V
Template Known Secondary structure																													T	T													T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	P	P	I	K	G	S	D	T	Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	S	C	A	R	R	S	K	R	G	A	V	V	G	G	G	L	L	G	L	E	A	A	G	A	L	K	N	L	G	I	E	T	H	V	I	E	F	A	P	M	L	M	A	E	Q	L	D	Q	M	G	G	E	Q	L
Query Conservation
Alig confidence																.	.	.	.	.	.	.																																																		.
Template Conservation																.	.	.	.	.	.	.																																																		.
Template Sequence		T	K	L	P	F	I	P	E	D	P	R	I	I	D	.	.	.	.	.	.	.	S	S	G	A	L	A	L	K	E	V	P	G	K	L	L	I	I	G	G	G	I	I	G	L	E	M	G	T	V	Y	S	T	L	G	S	R	L	D	V	V	E	M	M	D	G	L	M	Q	G	.	A	D	R	D	L	V	K	V	W
Template Known Secondary structure					S	S					T	T				.	.	.	.	.	.	.					T	T						S						S		S														T								S	S	S	S	S	S	T	T	.	S
Template Predicted Secondary structure																.	.	.	.	.	.	.																																																		.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290								.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.																							.	.
Query SS confidence																																						.	.																							.	.
Query Sequence		R	R	K	I	E	S	M	G	V	R	V	H	T	S	K	N	T	L	E	I	V	Q	E	G	V	E	A	R	K	T	M	R	F	A	D	G	.	.	S	E	L	E	V	D	F	I	V	F	S	T	G	I	R	P	R	D	K	L	A	T	.	.	Q	C	G	L	D	V	A	P	R	G	G	I	V	I	N	D	S	C
Query Conservation																																						.	.																							.	.
Alig confidence																																						.	.																							.	.
Template Conservation
Template Sequence		Q	K	Q	N	E	Y	R	F	D	N	I	M	V	N	T	K	T	V	A	V	E	P	K	E	D	G	V	Y	V	T	F	E	G	A	N	A	P	K	E	P	Q	R	Y	D	A	V	L	V	A	A	G	R	A	P	N	G	K	L	I	S	A	E	K	A	G	V	A	V	T	D	R	G	F	I	E	V	D	K	Q	M
Template Known Secondary structure						G	G	G							S										T	T								S	S	S			S	S					S												G	G	G	T	T	G	G	G	T	T					T	T	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		Q	T	S	D	P	D	I	Y	A	I	G	E	C	A	S	W	N	N	R	V	F	G	L	V	A	P	G	Y	K	M	A	Q	V	A	V	D	H	I	L	G	S	E	N	A	F	E	G	A	D	L	S	A	K	L	K	L	L	G	V	D	V	G	G	I	G	D	A	H	.	.	G	R	T	P	G	A	R	S	Y	V
Query Conservation																																																																						.	.
Alig confidence																	.	.	.	.																																			.															.	.
Template Conservation																	.	.	.	.																																			.
Template Sequence		R	T	N	V	P	H	I	Y	A	I	G	D	I	V	G	.	.	.	.	Q	P	M	L	A	H	K	A	V	H	E	G	H	V	A	A	E	N	C	A	G	H	K	A	Y	F	D	A	R	V	I	P	G	V	.	A	Y	T	S	P	E	V	A	W	V	G	E	T	E	L	S	A	K	A	S	A	R	K	I	T	K
Template Known Secondary structure		B		S	S	T	T					G	G	G	T		.	.	.	.	S	S																		T	T														.			S	S	S																T
Template Predicted Secondary structure																	.	.	.	.																																			.
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.					.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.		.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		348	.												350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.			.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.																												.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.																												.	.
Query Sequence		Y	L	.	.	.	.	.	.	.	.	.	.	.	D	E	S	K	E	I	Y	K	R	L	I	V	S	E	D	N	K	T	L	L	G	A	V	L	V	G	D	.	.	T	S	D	Y	G	N	L	L	Q	L	V	L	N	A	I	E	L	P	E	N	P	D	S	L	I	L	P	A	H	S	G	S
Query Conservation				.	.	.	.	.	.	.	.	.	.	.																												.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation
Template Sequence		A	N	F	P	W	A	A	S	G	R	A	I	A	N	G	C	D	K	P	F	T	K	L	I	F	D	A	E	T	G	R	I	I	G	G	G	I	V	G	P	N	G	G	D	M	I	G	E	V	C	L	A	I	E	M	G	C	D	A	A	D	I	G	K	T	I	H	P	H	P	T	L	G	E
Template Known Secondary structure						G	G	G							T	T			S									T	T	T		B								S	T	T														T	T		B						T	S				S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.