Job Description P08201 Confidence 100.00% Date Thu Jan 5 11:00:55 GMT 2012 Rank 18 Aligned Residues 398 % Identity 20% Template c1m6iA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:programmed cell death protein 8; PDBTitle: crystal structure of apoptosis inducing factor (aif) Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	K	V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	R	I	A	Y	D	R	V	H	L	S	S	Y	F	S	H	H	T	A	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.
Template Sequence		P	S	H	V	P	F	L	L	I	G	G	G	T	A	A	F	A	A	A	R	S	I	R	A	R	D	P	G	.	.	A	R	V	L	I	V	S	E	D	P	E	L	P	Y	M	R	P	P	L	S	K	E	L	W	F	S	P	N	V	T	K	T	L	R	F	K	Q	W	N	G	K	E	R	S	I	Y	F	Q	P	P
Template Known Secondary structure			S								S		S														S	T	T	.	.								S	S	S	S			B		S	G	G	G	G	T	G	G	G				T										T	T	S					S	B	S	S		G
Template Predicted Secondary structure																														.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
					61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.
Predicted Secondary structure		.	.	.																																																																	.	.	.	.
Query SS confidence		.	.	.																																																																	.	.	.	.
Query Sequence		.	.	.	L	S	L	V	R	E	G	F	Y	E	K	H	G	I	K	V	L	V	G	E	R	A	I	T	I	N	R	Q	E	K	V	I	H	S	S	A	G	R	T	V	F	Y	D	K	L	I	M	A	T	G	S	Y	P	W	I	P	P	I	K	G	S	D	T	Q	.	.	.	.	D	C	F	V	Y	R	T	I	E
Query Conservation		.	.	.																																																																	.	.	.	.
Alig confidence		.	.	.																																																																	.	.	.	.
Template Conservation
Template Sequence		S	F	Y	V	S	A	Q	D	L	P	H	I	E	N	G	G	V	A	V	L	T	G	K	K	V	V	Q	L	D	V	R	D	N	M	V	K	L	N	D	G	S	Q	I	T	Y	E	K	C	L	I	A	T	G	G	T	P	R	S	L	S	A	I	D	R	A	G	A	E	V	K	S	R	T	T	L	F	R	K	I	G
Template Known Secondary structure		G	G	S	B		T	T	T	T	T	T	S	T	T								T								G	G	G	T					T	T	S																								T	S							T						S
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		D	L	N	A	I	E	S	C	A	R	R	S	K	R	G	A	V	V	G	G	G	L	L	G	L	.	.	.	.	E	A	A	G	A	L	K	N	L	G	I	E	T	H	V	I	E	F	A	P	M	L	M	A	E	Q	L	D	Q	M	G	G	E	Q	L	R	R	K	I	E	S	M	G	V	R	V	H	T	S	K	N
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.
Template Conservation
Template Sequence		D	F	R	S	L	E	K	I	S	R	E	V	K	S	I	T	I	I	G	G	G	F	L	G	S	E	L	A	C	A	L	G	R	K	A	R	A	L	G	T	E	V	I	Q	L	F	P	E	K	G	N	M	G	K	I	L	P	E	Y	L	S	N	W	T	M	E	K	V	R	R	E	G	V	K	V	M	P	N	A	I
Template Known Secondary structure														S								S																		T								S	S	S	S	T	T	T	T	T	S														T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		T	L	E	I	V	Q	E	G	V	E	A	R	K	T	M	R	F	A	D	G	S	E	L	E	V	D	F	I	V	F	S	T	G	I	R	P	R	D	K	L	A	T	Q	C	G	L	D	V	A	.	P	R	G	G	I	V	I	N	D	S	C	Q	T	S	D	P	D	I	Y	A	I	G	E	C	A	S	W	N	N	R
Query Conservation																																																			.
Alig confidence											.	.																																							.															.
Template Conservation											.	.																																																						.
Template Sequence		V	Q	S	V	G	V	S	S	G	.	.	K	L	L	I	K	L	K	D	G	R	K	V	E	T	D	H	I	V	A	A	V	G	L	E	P	N	V	E	L	A	K	T	G	G	L	E	I	D	S	D	F	G	G	F	R	V	N	A	E	L	Q	A	R	.	S	N	I	W	V	A	G	D	A	A	C	F	Y	D	I
Template Known Secondary structure									T	T	.	.							T	T	S						S													T	T					T			B		T	T	T		S					T	T					.	T	T					G	G	G						T
Template Predicted Secondary structure											.	.																																																						.
Template SS confidence
		369	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		289	290	.						.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	F	G	.	.	.	.	.	L	V	A	P	G	Y	K	M	A	Q	V	A	V	D	H	I	L	G	S	E	N	A	F	E	G	A	D	L	S	A	K	L	K	L	L	G	V	D	V	G	G	I	G	D	A	H	G	R	T	P	G	A	R	S	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation					.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	G	R	R	R	V	E	H	H	D	H	A	V	V	S	G	R	L	A	G	E	N	M	T	G	A	A	K	P	Y	W	H	Q	S	M	F	W	S	D	L	G	P	D	V	G	Y	E	A	I	G	L	V	D	S	S	L	P	T	V	G	V	F	A	K	A	T	A	Q	D	N	P	K	S	A	T	E	Q	S	G
Template Known Secondary structure		T	T																							T	S															S	S	T	T											T	T	S											T	T		S									S
Template Predicted Secondary structure
Template SS confidence
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
									348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	Y	L	D	E	S	K	E	I	Y	K	R	L	I	V	S	E	D	N	K	T	L	L	G	A	V	L	V	G	D	T	S	D	Y	G	N	L	L	Q	L	V	L	N	A	I	E	L	P	E	N	P	D	S	L	I	L	P
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	I	R	S	E	S	E	T	E	S	E	A	S	Y	G	K	G	V	I	F	Y	L	R	D	K	V	V	V	G	I	V	L	W	N	I	F	N	R	M	P	I	A	R	K	I	I	K	D	G	E	Q	H	E	D	L	N	E	V	A	K	L	F
Template Known Secondary structure			S						S		S															T	T									S			S														B		S		S	T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.