Job Description P08201 Confidence 100.00% Date Thu Jan 5 11:00:55 GMT 2012 Rank 38 Aligned Residues 366 % Identity 22% Template c1lvlA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution Resolution 2.45 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																													.	.	.	.	.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	R	L	A	I	I	G	N	G	M	V	G	H	R	F	I	E	D	L	L	D	K	S	D	A	A	N	F	D	I	T	V	F	C	E	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	A	Y	D	R	V	H	L	S	S	Y	F	S
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.
Template Sequence		Q	T	T	L	L	I	I	G	G	G	P	G	G	Y	V	A	A	I	R	A	G	Q	L	G	.	.	.	.	I	P	T	V	L	V	E	G	Q	A	L	G	G	T	C	L	N	I	G	C	I	P	S	K	A	L	I	H	V	A	E	Q	F	H	Q	A	S	R	F	T	E	P	S	P	L	G	I	S	V	A	S	P
Template Known Secondary structure				S							S														T	.	.	.	.								S	S		T	T							S																				T	T	S			T	T
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		55	.	.	.	.	60												.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	H	T	A	E	E	.	.	.	.	.	.	.	.	.	.	.	L	S	L	V	R	E	G	F	Y	E	K	H	G	I	K	V	L	V	G	E	R	A	I	T	I	N	R	Q	E	K	V	I	H	S	S	A	G	R	T	V	F	Y	D	K	L	I	M	A	T	G	S	Y	P	W	I	P	P	I	K	G	S	D	T
Query Conservation								.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation																																											.	.	.	.
Template Sequence		R	L	D	I	G	Q	S	V	A	W	K	D	G	I	V	D	R	L	T	T	G	V	A	A	L	L	K	K	H	G	V	K	V	V	H	G	W	A	K	V	L	.	.	.	.	D	G	K	Q	V	E	V	D	G	Q	R	I	Q	C	E	H	L	L	L	A	T	G	S	S	S	V	E	L	P	M	L	P	L	G	G
Template Known Secondary structure																														T	T						S						.	.	.	.		T	T					T	T						S													B	T	T	B			B	T
Template Predicted Secondary structure																																											.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	C	F	V	Y	R	T	I	E	D	L	N	A	I	E	S	C	A	R	R	S	K	R	G	A	V	V	G	G	G	L	L	G	L	E	A	A	G	A	L	K	N	L	G	I	E	T	H	V	I	E	F	A	P	M	L	M	A	E	Q	L	D	Q	M	G	G	E	Q	L	R	R	K	I	E	S	M	G	V	R
Query Conservation
Alig confidence						.	.	.	.	.	.	.																																																		.
Template Conservation						.	.	.	.	.	.	.																																																		.
Template Sequence		P	V	I	S	.	.	.	.	.	.	.	S	T	E	A	L	A	P	K	A	L	P	Q	H	L	V	V	V	G	G	G	Y	I	G	L	E	L	G	I	A	Y	R	K	L	G	A	Q	V	S	V	V	E	A	R	E	R	I	L	P	T	.	Y	D	S	E	L	T	A	P	V	A	E	S	L	K	K	L	G	I	A
Template Known Secondary structure		T				.	.	.	.	.	.	.					T			S	S			S								S														T								S	S	S	S	S	S	T	T	.	S																T
Template Predicted Secondary structure						.	.	.	.	.	.	.																																																		.
Template SS confidence
		157	.	.	160								.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		V	H	T	S	K	N	T	L	E	I	V	Q	E	G	V	E	A	R	K	T	M	R	F	A	D	G	S	E	L	E	V	D	F	I	V	F	S	T	G	I	R	P	R	D	K	L	A	T	Q	C	G	L	D	V	A	.	P	R	G	G	I	V	I	N	D	S	C	Q	T	S	D	P	D	I	Y	A	I	G	E	C
Query Conservation																																																									.
Alig confidence															.	.																																									.
Template Conservation															.	.
Template Sequence		L	H	L	G	H	S	V	E	G	Y	E	N	G	.	.	C	L	L	A	N	D	G	K	G	G	Q	L	R	L	E	A	D	R	V	L	V	A	V	G	R	R	P	R	T	K	G	F	N	L	E	C	L	D	L	K	M	N	G	A	A	I	A	I	D	E	R	C	Q	T	S	M	H	N	V	W	A	I	G	D	V
Template Known Secondary structure				T	T								T	T	.	.							S	S	S								S													S	S	S	S	G	G	G	S						T	T						T	T		B		S	S	T	T					G	G	G
Template Predicted Secondary structure															.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																																									.	.																			.	.	.	.	.
Query SS confidence																																																									.	.																			.	.	.	.	.
Query Sequence		A	S	W	N	N	R	V	F	G	L	V	A	P	G	Y	K	M	A	Q	V	A	V	D	H	I	L	G	S	E	N	A	F	E	G	A	D	L	S	A	K	L	K	L	L	G	V	D	V	G	G	I	G	D	A	H	.	.	G	R	T	P	G	A	R	S	Y	V	Y	L	D	E	S	K	E	I	.	.	.	.	.
Query Conservation																																																									.	.																			.	.	.	.	.
Alig confidence				.	.	.	.																																			.															.	.																			.	.	.	.	.
Template Conservation				.	.	.	.																																			.
Template Sequence		A	G	.	.	.	.	E	P	M	L	A	H	R	A	M	A	Q	G	E	M	V	A	E	I	I	A	G	K	A	R	R	F	E	P	A	A	I	A	A	V	.	C	F	T	D	P	E	V	V	V	V	G	K	T	P	E	Q	A	S	Q	Q	G	L	D	C	I	V	A	Q	F	P	F	A	A	N	G	R	A	M	S
Template Known Secondary structure		G		.	.	.	.	S	S																		T	T								S						.			S	S	S															T	T										G	G	G
Template Predicted Secondary structure				.	.	.	.																																			.
Template SS confidence
		307	.					.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
								356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure		.	.	.	.	.	.																					.
Query SS confidence		.	.	.	.	.	.																					.
Query Sequence		.	.	.	.	.	.	Y	K	R	L	I	V	S	E	D	N	K	T	L	L	G	A	V	L	V	G	.	D	T	S	D	Y	G	N	L	L	Q	L	V	L	N	A	I
Query Conservation		.	.	.	.	.	.																					.
Alig confidence		.	.	.	.	.	.																					.
Template Conservation
Template Sequence		L	E	S	K	S	G	F	V	R	V	V	A	R	R	D	N	H	L	I	L	G	W	Q	A	V	G	V	A	V	S	E	L	S	T	A	F	A	Q	S	L	E	M	G
Template Known Secondary structure		T	T												T	T	T		B									T	T	G	G	G												T
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.