|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
S | K | V | R | L | A | I | I | G | N | G | M | V | G | H | R | F | I | E | D | L | L | D | K | S | D | A | A | N | F | D | I | T | V | F | C | E | E | P | R | I | A | Y | D | R | V | H | L | S | S | Y | F | S | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |
|   |
|
|
|
|
|
|
|
|   |
|
|
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |   |
|   |   |   |
| . | . | . | . |   |   |
|   |
|
|
|
|   |   |   |   |
|
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
Q | K | F | D | V | V | V | I | G | A | G | P | G | G | Y | V | A | A | I | R | A | A | Q | L | G | . |
. |
. |
. |
L | K | T | A | C | I | E | K | Y | I | G | K | E | G | K | V | A | L | G | G | T | C | L | N | V | G | C | I | P | S | K | A | L | L | D | S | S | Y | K | Y | H | E | A | K | E | A | F | K | V | H | G |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | . | . |
|
|  |  |  |  |  |
|
| B |
| S | S | S | S | B |
| T | T |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S | G | G | G | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
|
|
|
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
56 | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
|
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  | . | . |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
H | T | A | E | E | L | S | L | V | R | E | G | F | Y | E | K | H | G | I | K | V | L | V | G | E | R | A | I | T | I | N | R | Q | E | K | V | I | H | S | S | A | G | R | T | . |
. |
V | F | Y | D | K | L | I | M | A | T | G | S | Y | P | W | I |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |
|   |   |   |   |
|   |   | . | . |
|   |
|
|   |
|
|
|
|
|
|
|   |
|   |   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | E | A | K | G | V | T | I | D | V | P | A | M | V | A | R | K | A | N | I | V | K | N | L | T | G | G | I | A | T | L | F | K | A | N | G | V | T | S | F | E | . |
G | H | G | K | L | L | A | N | K | Q | V | E | V | T | G | L | D | G | K | T | Q | V | L | E | A | E | N | V | I | I | A | S | G | S | R | P | V | E |
Template Known Secondary structure |   |
|
|
| S | S |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  | . |  |  |  |  |  |  | G | G | G |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  | . |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | |
. | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
  |
  |   |
116 | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | P | I | K | G | S | D | T | Q | D | C | F | V | Y | R | T | I | E | D | L | N | A | I | E | S | C | A | R | R | S | K | R | G | A | V | V | G | G | G | L | L | G | L | E | A | A | G | A | L | K | N | L | G | I | E | T | H | V | I | E | F | A | P | M | L | M | A | E | Q | L | D | Q | M | G | G | E | Q | L | R | R |
Query Conservation |   |
|   |
|
|
|   |   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|   |
|
|
|
|   |
|   |   |
|   |   |   |
|   |   |
|
|
|
|   |   |   |   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | P | P | A | P | L | S | D | D | I | I | V | . |
. |
. |
. |
. |
. |
D | S | T | G | A | L | E | F | Q | A | V | P | K | K | L | G | V | I | G | A | G | V | I | G | L | E | L | G | S | V | W | A | R | L | G | A | E | V | T | V | L | E | A | L | D | K | F | L | P | A | . |
A | D | E | Q | I | A | K | E | A | L | K |
Template Known Secondary structure |   |
B | T | T | B |
|
|
| T | T | T |  |  | . | . | . | . | . | . |
|  |  |  |  | T | T |
| S | S |
|
| S |  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| S | S | S | S | S | S | T | T | . | S |
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  | . | . | . | . | . | . |  |  |  |  |  |
|
|
|  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
157 | . | . | 160 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
. | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | |
. | 220 | . | . | . | . | . | . | . | . | . |
  |
  |   |
196 | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | |
230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | |
|
. | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |
|
|
|  |  |  |  |  |
|
|  |  |
|
|  |  | . | . |  |  |  |  |
|
|
|  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | I | E | S | M | G | V | R | V | H | T | S | K | N | T | L | E | I | V | Q | E | G | V | E | A | R | K | T | M | R | F | A | D | G | . |
S | E | L | E | V | D | F | I | V | F | S | T | G | I | R | P | R | D | K | . |
. |
L | A | T | Q | C | G | L | D | V | A | P | R | G | G | I | V | I | N | D | S | C | Q | T | S |
Query Conservation |   |
  |
|   |   |   |
|
|   |
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
| . |   |   |
|   |
|
|   |
|
|   |
|   |
|   |   |
|
|   |   | . | . |
|
|   |   |   |
|
|   |   |   |   |   |
|
|
|   |
|
|   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|   |
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |   |   |   |
|
|
Template Sequence |   |
V | L | T | K | Q | G | L | N | I | R | L | G | A | R | V | T | A | S | E | V | K | K | K | Q | V | T | V | T | F | T | D | A | N | G | E | Q | K | E | T | F | D | K | L | I | V | A | V | G | R | R | P | V | T | T | D | L | L | A | A | D | S | G | V | T | L | D | E | R | G | F | I | Y | V | D | D | H | C | K | T | S |
Template Known Secondary structure |   |
 |  |  |  | T | T |
|  |  |  | T | T |
|  |  |  |  |
|
|  |  | T | T |  |  |  |  |  |  |  |
| S | S |
|  |  |  |  |  |  | S | S |  |  |  |
| S |
|  |  |  |
|
| T | T | T | B |
| T | T | S |
|
|
| B |
| T | T | S |
| B |
|
|
| T | T |
| B |
| S |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . |
  |
  |   |
273 | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | |
|
. | . | 340 | . | . | . | . | . | . | . | . | . | |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
| . | . |
|
|
|
|
|
|  |  |  |  |  |  | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
Query Sequence |   |
D | P | D | I | Y | A | I | G | E | C | A | S | W | N | N | R | V | F | G | L | V | A | P | G | Y | K | M | A | Q | V | A | V | D | H | I | L | G | S | E | N | A | F | E | G | A | D | L | S | A | K | L | K | L | L | G | V | D | V | G | G | I | G | D | A | H | . |
. |
G | R | T | P | G | A | R | S | Y | V | Y | L | . |
Query Conservation |   |
  |
|   |
|
|
|
|
|
|   |
|   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |
|
|   |
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |
|   |   |
|   |
|   |
|   |   |   | . | . |   |   |   |   |   |   |   |   |
|   |   |   | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
  |
|   |
|
|
|   |
|
|   |
|   | . | . | . | . |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
Template Sequence |   |
V | P | G | V | F | A | I | G | D | V | V | R | . |
. |
. |
. |
G | A | M | L | A | H | K | A | S | E | E | G | V | M | V | A | E | R | I | A | G | H | K | A | Q | M | N | Y | D | L | I | P | S | . |
V | I | Y | T | H | P | E | I | A | W | V | G | K | T | E | Q | T | L | K | A | E | G | V | E | V | N | V | G | T | F |
Template Known Secondary structure |   |
S | T | T |  |  |  |
| G | G | G | S | S | . | . | . | . | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|
|
| G | G | G |
|
|  | . |  |  |
| S | S | S |  |  |  |  |  |  |
|
|  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
|
| . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  | . |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
310 | . | . | . | . | . | . | . | . | . | 320 | . | |
|
|
|
. | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | |
. | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | |
|
. | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | E | S | K | E | I | Y | K | R | L | I | V | S | E | D | N | K | T | L | L | G | A | V | L | V | G | D | . |
. |
T | S | D | Y | G | N | L | L | Q | L | V | L | N | A | I | E | L | P | E | N | P | D |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . |
|   |   |   |   |   |
|   |
|   |
|
|   |   |   |   |   |   |
|   |
|
|
|   |
|
|   | . | . |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |
|
|
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |
Template Sequence |   |
P | F | A | A | S | G | R | A | M | A | A | N | D | T | T | G | L | V | K | V | I | A | D | A | K | T | D | R | V | L | G | V | H | V | I | G | P | S | A | A | E | L | V | Q | Q | G | A | I | G | M | E | F | G | T | S | A | E | D | L | G | M |
Template Known Secondary structure |   |
 | G | G | G |
|  |  |  |  |  |  | T |
|
|
|
|  |  |  |  |  |  |  | S | S | S |
| B |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| B |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
385 | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . |
  |