Return to main results Retrieve Phyre Job Id

Job DescriptionP08201
Confidence100.00%DateThu Jan 5 11:00:55 GMT 2012
Rank44Aligned Residues380
% Identity17%Templatec1lpfB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.....
Predicted Secondary structure 



























..........................
Query SS confidence 





















































. . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  SKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSH. . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation   
 







 



 
  
          




 
    
    
      ..........................
Alig confidence 
























....
























..........................
Template Conservation    








 


 

  
   
....  
 



    

    
      
  
                      
Template Sequence  QKFDVVVIGAGPGGYVAAIRAAQLG. . . . LKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKYHEAKEAFKVHG
Template Known Secondary structure 


ST....



B
SSSSB
TTSTSGGGT
Template Predicted Secondary structure 






....


























Template SS confidence 















































































   2.......10.........20...... ...30.........40.........50.........60.........70.......
 
   56...60.........70.........80.........90......... 100.........110.....
Predicted Secondary structure  ..................















..








Query SS confidence  . . . . . . . . . . . . . . . . . .











































. .















Query Sequence  . . . . . . . . . . . . . . . . . . HTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRT. . VFYDKLIMATGSYPWI
Query Conservation  ..................     
           

    
  
  

   
 
    
  ..
 

 






 
  
Alig confidence  ..................






















.



















..















Template Conservation                                           .            
                         
Template Sequence  IEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFE. GHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVE
Template Known Secondary structure 


SS



T.GGGTTS





Template Predicted Secondary structure 
















.






















Template SS confidence 















































































   78.80.........90.........100.........110........ .120.........130.........140.........150......
 
   116...120.........130.........140.........150.........160.........170.........180.........190.....
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  PPIKGSDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRR
Query Conservation 
 


    

       
   
       
 






 



 
  
   
  



     

   

      
  
Alig confidence 











......

















































.










Template Conservation              ......                  
                               .           
Template Sequence  IPPAPLSDDIIV. . . . . . DSTGALEFQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPA. ADEQIAKEALK
Template Known Secondary structure  BTTB


TTT......
TT
SS

S

STT

SSSSSSTT.S
Template Predicted Secondary structure 








......





























.


Template SS confidence 















































































   157..160........ .170.........180.........190.........200.........210........ .220.........
 
   196...200.........210.........220......... 230.........240........ .250.........260.........270..
Predicted Secondary structure 










.







..














Query SS confidence 

































.


















. .























Query Sequence  KIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG. SELEVDFIVFSTGIRPRDK. . LATQCGLDVAPRGGIVINDSCQTS
Query Conservation   
   

 
     
  
       
  
   

.  
 

 

 
 
  

  ..

   

     


 

  



Alig confidence 

































.


















..























Template Conservation       

 
     
  
        
             
 

 
 
  
                 
 
 

    

Template Sequence  VLTKQGLNIRLGARVTASEVKKKQVTVTFTDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDHCKTS
Template Known Secondary structure  TT
TT


TT
SS
SS
S


TTTB
TTS


B
TTS
B


TT
B
S
Template Predicted Secondary structure 






































Template SS confidence 















































































   230.........240.........250.........260.........270.........280.........290.........300.........
 
   273......280.........290.........300.........310.........320.........330....... ..340.........
Predicted Secondary structure 



























..





.
Query SS confidence 
































































. .











.
Query Sequence  DPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIGDAH. . GRTPGARSYVYL.
Query Conservation   
 





 
   
    
   
  

 
 
  
 
           
 

  
  
 
 
   ..        
   .
Alig confidence 











....
































.














..











.
Template Conservation   
 


 

 
 ....       
  

  

 

 
            .        
  
 
   
   
        
Template Sequence  VPGVFAIGDVVR. . . . GAMLAHKASEEGVMVAERIAGHKAQMNYDLIPS. VIYTHPEIAWVGKTEQTLKAEGVEVNVGTF
Template Known Secondary structure  STT
GGGSS....S


TT





GGG

.
SSS

TT

Template Predicted Secondary structure 







....















.










Template SS confidence 















































































   310.........320. ........330.........340.........350.... .....360.........370.........380....
 
   350.........360.........370...... ...380.........390........
Predicted Secondary structure  ..........










..








Query SS confidence  . . . . . . . . . .


























. .





















Query Sequence  . . . . . . . . . . DESKEIYKRLIVSEDNKTLLGAVLVGD. . TSDYGNLLQLVLNAIELPENPD
Query Conservation  ..........
     
 
 

      
 


 

 ..      
             
 
Alig confidence  ..........


























..





















Template Conservation                    


       


    
      
      
    
   
  
Template Sequence  PFAASGRAMAANDTTGLVKVIADAKTDRVLGVHVIGPSAAELVQQGAIGMEFGTSAEDLGM
Template Known Secondary structure  GGG
T



SSS
BTTTT
BT
Template Predicted Secondary structure 





















Template SS confidence 




























































   385....390.........400.........410.........420.........430.........440.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions