|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
K | V | R | L | A | I | I | G | N | G | M | V | G | H | R | F | I | E | D | L | L | D | K | S | D | A | A | N | F | D | I | T | V | F | C | E | E | P | R | I | A | Y | D | R | V | H | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|   |
|
|
|
|
|
|
|
|   |
|
|
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |   |   |   |
|   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|
|   |
|
|   |   |
| . | . | . | . |   |   |
|   |
|
|
|
|   |   |   |   |
|
|   |
|   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
T | V | D | V | V | V | V | G | S | G | G | A | G | F | S | A | A | I | S | A | T | D | S | G | . |
. |
. |
. |
A | K | V | I | L | I | E | K | E | P | V | I | G | G | N | A | K | L | A | A | G | G | M | N | A | A | W | T | D | Q | Q | K | A | K | K | I | T | D | S | P | E | L | M | F | E | D | T | M | K | G | G | Q |
Template Known Secondary structure |   |
 |
| S |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . | . |
|
|  |  |  |  |
| S | S | S | S | S |
| T | T | G | G | G |
|
| S |
|  |  |
| S | S |
|  |  |  |  |  | T | T |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
126 | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | |
|
|
|
150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | S | Y | F | S | H | H | T | A | E | E | L | S | L | V | R | E | G | F | Y | E | K | H | G | I | K | V | L | V | G | E | R | A | I | T | I |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |
|   |   |
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |
|   |   |
|
Template Sequence |   |
N | I | N | D | P | A | L | V | K | V | L | S | S | H | S | K | D | S | V | D | W | M | T | A | M | G | A | D | L | T | D | V | G | M | M | G | G | A | S | V | N | R | A | H | R | P | T | G | G | A | G | V | G | A | H | V | V | Q | V | L | Y | D | N | A | V | K | R | N | I | D | L | R | M | N | T | R | G | I | E | V |
Template Known Secondary structure |   |
T |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|  |  |  |
|
| T | T |
| S | S |
|
|  |  |  | S | T | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  | S | S |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . |
  |
  |   |
86 | . | . | . | 90 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | |
|
100 | . | . | . | . | . | . | . | . | . | 110 | . |
Predicted Secondary structure |   |
 |
|
|
|
| . | . | . | . | . | . |  |  |  |  |
|
|
|
|  | . | . |  |  |
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | R | Q | E | K | . |
. |
. |
. |
. |
. |
V | I | H | S | S | A | G | R | T | . |
. |
V | F | Y | D | K | L | I | M | A | T | G | S |
Query Conservation |   |
|   |   |   |
| . | . | . | . | . | . |   |
|   |   |   |   |
|   |   | . | . |
|   |
|
|   |
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|
Template Sequence |   |
L | K | D | D | K | G | T | V | K | G | I | L | V | K | G | M | Y | K | G | Y | Y | W | V | K | A | D | A | V | I | L | A | T | G | G |
Template Known Secondary structure |   |
 |  |
| T | T | S | S |  |  |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  |
| S |  |  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
282 | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . |
  |