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Job DescriptionP08201
Confidence100.00%DateThu Jan 5 11:00:55 GMT 2012
Rank65Aligned Residues309
% Identity16%Templatec1gthD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGER
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Template Sequence  YSAKIALLGAGPASISCASFLARLGYSD. . . ITIFEKQEYVGG. . LSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKS
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Query Sequence  AITINRQEKVIHSSAGRTVFYDKLIMATGSY. PWIPPIKG. . SDTQDCFVYRTIEDLNAIESCA. . . . . . . . . . RRSKRG
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Template Sequence  LSENEITLNTLKEEG. . . . . YKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAV
Template Known Secondary structure  BSTTSB
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Query Sequence  AVVGGGLLGLEAAGALKNLG. IETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA
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Template Sequence  IVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEE. . . . . KCEFLPFLSPRKVIVK. GGRIVAVQFV
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   336...340.........350.........360.........370.........380... ......390......... 400.........
 
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Query Sequence  DG. . . . . . . . . . . . . . . SELEVDFIVFSTGIRPRDKLATQ. . CGLDVAPRGGIVIN. DSCQTSDPDIYAIGECASWNNRV
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Template Sequence  RTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN. .
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   410.........420.........430.........440.........450.........460.........470.........480.......
 
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Query Sequence  FGLVAPGYKMAQVAVDHI. . . . . . . . . . . . . . . . LGSENAFEGADLSAKLKLLGVDV
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Template Sequence  . . TTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKF
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   488.490.........500.........510.........520.........530.........540..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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