Job Description P75966 Confidence 100.00% Date Thu Jan 5 12:16:33 GMT 2012 Rank 3 Aligned Residues 188 % Identity 31% Template c3dh3C_ PDB info PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate Resolution 3.00 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																											.	.	.																																			.
Query SS confidence																											.	.	.																																			.
Query Sequence		T	M	Q	K	T	S	F	R	N	H	Q	V	K	R	F	S	S	Q	R	S	T	R	R	K	P	.	.	.	E	N	Q	P	T	R	V	I	L	F	N	K	P	Y	D	V	L	P	Q	F	T	D	E	A	G	R	K	T	L	K	E	F	I	P	.	V	Q	G	V	Y	A	A	G	R	L	D	R	D	S	E	G	L
Query Conservation																											.	.	.																																			.
Alig confidence																											.	.	.																									.										.
Template Conservation																																																						.
Template Sequence		L	N	G	K	R	A	T	I	G	D	Q	V	K	P	G	D	V	V	K	V	N	G	Q	L	I	E	P	R	E	A	E	D	L	V	L	I	A	L	N	K	P	V	G	I	V	S	T	T	E	D	G	E	.	R	D	N	I	V	D	F	V	N	H	S	K	R	V	F	P	I	G	R	L	D	K	D	S	Q	G	L
Template Known Secondary structure			T	T					T	T					T	T						T	T								G	G	G										T	T		B					S	S		.	T	T	B						T		S	S					S	S				T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	L	T	N	N	G	A	L	Q	A	R	L	T	Q	P	G	K	R	T	G	K	I	Y	Y	V	Q	V	E	G	I	P	T	Q	D	A	L	E	A	L	R	N	G	V	T	L	N	D	G	P	T	L	P	A	G	A	E	L	V	D	E	P	A	W	L	W	P	R	N	P	P	I	R	E	R	K	S	I	P	T
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	F	L	T	N	H	G	D	L	V	N	K	I	L	R	A	G	N	D	H	E	K	E	Y	L	V	T	V	D	K	P	I	T	E	E	F	I	R	G	M	S	A	G	V	P	I	L	G	T	V	T	K	K	C	K	V	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	P
Template Known Secondary structure						S		T									G	G	G											S	S												T			B		S	S	S	B									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.																				.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	L	K	I	T	L	Y	E	G	R	N	R	Q	V	R	R	M	T	A	H	V	G	F	P	T	L	R	L	I	R	Y	A	M	G	D	Y	S	L	D	N	L	A	N	G	E	W	R	E	V	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	F	R	I	T	L	V	Q	G	L	N	R	Q	I	R	R	M	C	E	H	F	G	Y	E	V	K	K	L	E	R	T	R	I	M	N	V	S	L	S	G	I	P	L	G	E	W	R	D	L	T	D
Template Known Secondary structure		S							S				T	T									T	T												T	T				T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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