Job Description P75966 Confidence 100.00% Date Thu Jan 5 12:16:33 GMT 2012 Rank 13 Aligned Residues 163 % Identity 20% Template c2i82D_ PDB info PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure Resolution 2.05 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.																																.	.
Query SS confidence																																					.	.	.																																.	.
Query Sequence		K	P	E	N	Q	P	T	R	V	I	L	F	N	K	P	Y	D	V	L	P	Q	F	T	D	E	A	G	R	K	T	L	K	E	F	I	.	.	.	P	V	Q	G	V	Y	A	A	G	R	L	D	R	D	S	E	G	L	L	V	L	T	N	N	G	A	L	Q	A	R	L	.	.	T	Q	P	G	K	R	T	G	K
Query Conservation																																					.	.	.																																.	.
Alig confidence																																					.	.	.																																.	.
Template Conservation
Template Sequence		V	I	L	Y	Q	D	D	H	I	X	V	V	N	K	P	S	G	L	L	S	V	P	G	R	L	E	E	H	K	D	S	V	X	T	R	I	Q	R	D	Y	P	Q	A	E	S	V	H	R	L	D	X	A	T	S	G	V	I	V	V	A	L	T	K	A	A	E	R	E	L	K	R	Q	F	R	E	R	E	P	K	K
Template Known Secondary structure								S	S								T	T	S	B	S	S			S	S	G	G	G			B						T	T	T	S	T	T				S	S				S	S									S	S													T	T		S
Template Predicted Secondary structure
Template SS confidence
		915	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	Y	V	Q	V	E	G	I	P	T	Q	D	A	L	E	A	L	R	N	G	V	T	L	N	D	G	P	T	L	P	A	G	A	E	L	V	D	E	P	A	W	L	W	P	R	N	P	P	I	R	E	R	K	S	I	P	T	S	W	L	K	I	T	L	Y	E	G	R	N	R	Q	V	R	R	M	T	A	H	V
Query Conservation
Alig confidence																	.	.	.
Template Conservation																	.	.	.
Template Sequence		Q	Y	V	A	R	V	W	G	H	P	S	P	A	E	G	.	.	.	L	V	D	L	P	L	I	C	D	W	P	N	R	P	K	Q	K	V	C	Y	E	T	G	K	P	A	Q	T	E	Y	E	V	V	E	Y	A	A	D	N	T	A	R	V	V	L	K	P	I	T	G	R	S	H	Q	L	R	V	H	X	L	A	L
Template Known Secondary structure									S			S	S	S			.	.	.										G	G	G	T	T						T	T	T		B													T	T	T									S	S			T	T
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		995	.	.	.	.	1000	.	.	.	.	.	.	.	.	.				1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.
		188	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	P	T	L	R	L	I	R	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	H	P	I	L	G	D	R	F	Y	A
Template Known Secondary structure		T			B	T	T		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		1072	.	.	.	.	.	.	.	1080	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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