Job Description P75966 Confidence 6.20% Date Thu Jan 5 12:16:33 GMT 2012 Rank 40 Aligned Residues 74 % Identity 16% Template c2exuA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain Resolution 2.23 Å

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		83	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		E	G	L	L	V	L	T	N	N	G	A	.	L	Q	A	R	L	T	Q	P	G	K	R	T	G	K	I	Y	Y	V	Q	V	E	G	I	P	T	Q	D	A	L	E	A	L	R	N	G	V	T	L	N	D	G	P	T	L	P	A	G	A	E	L	V	D	E	P	A	W	L	W	P	R	N	P	P	I	R	E	R	K
Query Conservation													.
Alig confidence													.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	L	V	G	M	C	K	P	T	K	S	W	V	A	K	W	L	S	V	D	H	S	I	A	G	M	Y	A	I	K	V	D	G	R	L	P	A	E	V	V	E	L	L	P	H	Y	K	P	R	D	G	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S		T	T	T							T	T		T	T	S		S									S								T	T		T	T				T	T	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	P	T	S	W	L	K	I	T	L	Y	E	G	R	N	R	Q	V	R	R	M	T
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	S	A	T	I	W	G	V	R	C	R	P	G	K	E	K	E	L	I	R	K	L
Template Known Secondary structure		.	.											T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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