Job Description P75966 Confidence 100.00% Date Thu Jan 5 12:16:33 GMT 2012 Rank 4 Aligned Residues 189 % Identity 28% Template c1vioA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Resolution 1.59 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		T	M	Q	K	T	S	F	R	N	H	Q	V	K	R	F	S	S	Q	R	S	T	.	.	.	R	R	K	P	E	N	Q	P	T	R	V	I	L	F	N	K	P	Y	D	V	L	P	Q	F	T	D	E	A	G	R	K	T	L	K	E	F	I	P	V	Q	G	V	Y	A	A	G	R	L	D	R	D	S	E	G	L	L
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		K	I	N	G	E	I	V	K	S	G	S	V	Q	I	S	Q	E	D	E	I	Y	F	E	D	E	L	L	T	W	I	E	E	G	Q	Y	F	M	L	N	K	P	Q	G	C	V	C	S	N	D	D	Y	P	T	I	Y	Q	F	F	D	Y	P	L	A	G	K	L	H	S	A	G	R	L	D	V	D	T	T	G	L	V
Template Known Secondary structure				T	T						T	T					T	T	S					T	T					S	S												T	T		B	S	S						B	G	G	G	G	S		T	T	G	G	G	G				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		V	L	T	N	N	G	A	L	Q	A	R	L	T	Q	P	G	K	R	T	G	K	I	Y	Y	V	Q	V	E	G	I	P	T	Q	D	A	L	E	A	L	R	N	G	V	T	L	N	D	G	.	.	P	T	L	P	A	G	A	E	L	V	D	E	P	A	W	L	W	P	R	N	P	P	I	R	E	R	K	S	I	P
Query Conservation																																																		.	.
Alig confidence																																																		.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	T	D	D	G	Q	W	S	H	R	I	T	S	P	K	H	H	C	E	K	T	Y	L	V	T	L	A	D	P	V	E	E	N	Y	S	A	A	C	A	E	G	I	L	L	R	G	E	K	E	P	T	K	P	A	K	L	E	I	L	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S											T	T	S											S	S				T	T												T	T		S	S											S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		T	S	W	L	K	I	T	L	Y	E	G	R	N	R	Q	V	R	R	M	T	A	H	V	G	F	P	T	L	R	L	I	R	Y	A	M	G	D	Y	S	L	D	N	.	L	A	N	G	E	W	R	E	V	T	D
Query Conservation																																												.
Alig confidence		.																																										.
Template Conservation		.
Template Sequence		.	Y	N	V	N	L	T	I	S	E	G	R	Y	H	Q	V	K	R	M	F	A	A	L	G	N	K	V	V	G	L	H	R	W	K	I	G	D	V	V	L	D	E	S	L	E	E	G	E	Y	R	P	L	T	Q
Template Known Secondary structure		.	S							S				T	T									T	T												T	T					T	T			T	T
Template Predicted Secondary structure		.
Template SS confidence
			172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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