Job Description P75966 Confidence 98.38% Date Thu Jan 5 12:16:33 GMT 2012 Rank 22 Aligned Residues 150 % Identity 20% Template c1sgvA_ PDB info PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) Resolution 1.90 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																																									.	.																					.	.	.
Query SS confidence																																																									.	.																					.	.	.
Query Sequence		T	R	V	I	L	F	N	K	P	Y	D	V	L	P	Q	F	T	D	E	A	G	R	K	T	L	K	E	F	I	P	V	Q	G	V	Y	A	A	G	R	L	D	R	D	S	E	G	L	L	V	L	T	N	N	G	A	.	.	L	Q	A	R	L	T	Q	P	G	K	R	T	G	K	I	Y	Y	V	Q	V	.	.	.
Query Conservation																																																									.	.																					.	.	.
Alig confidence																	.	.	.	.																																					.	.								.	.	.	.										.	.	.
Template Conservation																	.	.	.	.																																														.	.	.	.
Template Sequence		P	G	I	V	V	I	D	K	P	A	G	M	T	S	H	.	.	.	.	D	V	V	G	R	C	R	R	I	F	A	T	R	R	V	G	H	A	G	T	L	D	P	M	A	T	G	V	L	V	I	G	I	E	R	A	T	K	I	L	G	L	L	T	A	.	.	.	.	A	P	K	S	Y	A	A	T	I	R	L	G
Template Known Secondary structure		S									T	T					.	.	.	.										T	T		S					S	S				T	T										G	G	G	G	G	G	G	G	G	T	T	T	.	.	.	.	S											T
Template Predicted Secondary structure																	.	.	.	.																																														.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20					.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.
																			114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	I	P	T	Q	D	A	L	E	A	L	R	N	G	V	T	L	N	D	G	P	T	L	P	A	G	A	E	L	V	D	E	P	A	W	L	W	P	R	N	P	P	I	R	E	R	K	S	I	P	T	S	W	L	K	I	T	L	Y	E	G	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	T	S	T	E	D	A	E	G	Q	V	L	Q	S	V	P	A	K	H	L	T	I	E	A	I	D	A	A	M	E	R	L	R	G	E	I	L	E	A	R	P	I	R	I	D	R	.	.	.	.	.	.	.	.	.	.	F	E	L	L	A	A	R	R	R	D	Q	L	I	D	I	D	V	E	I	D	C	S	S
Template Known Secondary structure					T	T	S	B	T	T	S									T	T													T															.	.	.	.	.	.	.	.	.	.										T	T											S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.											.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.
Query Sequence		N	R	Q	V	R	R	M	T	A	H	V	G	F	.	.	.	.	.	.	P	T	L	R	L	I	R	Y	A	M	G	D	Y	S	L	D	N
Query Conservation															.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	Y	I	R	A	L	A	R	D	L	G	D	A	L	G	V	G	G	H	V	T	A	L	R	R	T	R	V	G	R	F	E	L	D	Q
Template Known Secondary structure			T	T													T	S													T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions