Job Description P0ACU0 Confidence 99.72% Date Thu Jan 5 11:19:02 GMT 2012 Rank 84 Aligned Residues 180 % Identity 12% Template c3qkxB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator hi_0893; PDBTitle: crystal structure of a tetr-family transcriptional regulator (hi0893)2 from haemophilus influenzae rd at 2.35 a resolution Resolution 2.35 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		Q	A	K	K	Q	L	I	A	A	A	L	A	Q	F	G	E	Y	G	M	N	A	.	T	T	R	E	I	A	A	Q	A	G	Q	N	I	A	A	I	T	Y	Y	F	G	S	K	E	D	L	Y	L	A	C	A	Q	W	I	A	D	F	I	G	E	Q	F	R	P	H	A	E	E	A	E	R	L	F	A	Q	P	Q	P
Query Conservation																							.
Alig confidence																							.																																																								.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		D	L	A	E	Q	I	F	S	A	T	D	R	L	X	A	R	E	G	L	N	Q	L	S	X	L	K	L	A	K	E	A	N	V	A	A	G	T	I	Y	L	Y	F	K	N	K	D	E	L	L	E	Q	F	A	H	R	V	F	S	X	F	X	A	T	L	E	K	D	F	D	E	T	K	P	F	F	E	Q	.	.	.
Template Known Secondary structure																		S		G	G	G										T	T	S										S	S																						T	T			T	T	S						.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	A	A	I	R	E	L	I	L	R	A	C	R	N	M	I	K	L	L	T	Q	D	D	T	V	N	L	S	K	F	I	S	R	E	Q	L	S	P	T	A	A	Y	H	L	V	H	E	Q	V	I	S	P	L	H	S	H	L	T	R	L	I	A	A	W	T	G	C	D	A	N	D	T	R	M	I	L	H	T	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Y	R	Q	X	W	K	N	I	W	Y	F	L	Q	E	N	P	T	I	L	S	N	L	K	Q	Y	E	S	L	P	N	F	K	D	I	C	K	N	I	K	N	C	R	W	D	L	F	C	H	Q	A	Q	K	.	.	.	.	.	.	A	G	L	L	A	E	L	S	E	D	I	L	F	L
Template Known Secondary structure		.	.	.	.	.	.	.	.																										T	T	S	T	T							T			S													.	.	.	.	.	.	T	T		B		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.
Template SS confidence
										84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	I	G	E	I	L	A	F	R	L	G	K	E	T	I	L	L	R	T	G	W	T	A	F	D	E	E	K	T	E	L	I	N	Q	T	V	T	C	H	I	D	L	I	L	Q	G	L	S	Q
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	L	K	T	A	I	N	L	A	S	D	A	K	F	I	.	.	.	.	.	.	.	.	.	.	.	.	D	F	D	L	K	P	E	I	L	E	S	V	I	E	R	S	W	R	A	I	Q	K
Template Known Secondary structure			T	T								S						.	.	.	.	.	.	.	.	.	.	.	.																			T	T	B
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.													.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions