Job Description P0ACU0 Confidence 99.80% Date Thu Jan 5 11:19:02 GMT 2012 Rank 36 Aligned Residues 187 % Identity 14% Template c3ppbB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr family transcription regulator; PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution Resolution 2.10 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		E	Q	A	K	K	Q	L	I	A	A	A	L	A	Q	F	G	E	Y	G	M	N	A	.	T	T	R	E	I	A	A	Q	A	G	Q	N	I	A	A	I	T	Y	Y	F	G	S	K	E	D	L	Y	L	A	C	A	Q	W	I	A	D	F	I	G	E	Q	F	R	P	H	A	E	E	A	E	R	L	F	A	Q	P	Q
Query Conservation																								.
Alig confidence																								.																																																							.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		R	T	K	K	Q	A	I	L	E	T	A	L	Q	L	F	V	S	Q	G	F	H	G	T	S	T	A	T	I	A	R	E	A	G	V	A	T	G	T	L	F	H	H	F	P	S	K	E	Q	L	L	E	Q	L	F	L	G	V	K	Q	E	F	A	D	A	I	Q	A	S	V	S	S	R	G	D	L	K	Q	.	.	.
Template Known Secondary structure																			T		S	T	T	S										T											S	S																							T					S					.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	R	A	A	I	R	E	L	I	L	R	A	C	R	N	M	I	K	L	L	T	Q	D	D	T	V	N	L	S	K	F	I	S	R	E	Q	L	S	P	T	A	A	Y	H	L	V	H	E	Q	V	I	S	P	L	H	S	H	L	T	R	L	I	A	A	W	T	G	C	D	A	N	D	T	R	M	I	L	H	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																											.	.	.
Template Conservation		.	.	.	.	.	.	.	.																											.	.	.
Template Sequence		.	.	.	.	.	.	.	.	D	A	E	Q	L	W	F	A	A	L	T	W	A	X	A	N	P	L	K	Q	A	F	F	Q	L	Y	.	.	.	S	X	S	P	T	V	E	Q	S	V	R	D	Q	A	X	H	G	I	L	G	F	I	A	E	L	I	R	Q	G	Q	A	S	G	E	L	A	E	Y	P	I	E	L	X
Template Known Secondary structure		.	.	.	.	.	.	.	.																											.	.	.	T	T	S	T	T	S											T	T	T													T	T	S	B			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																											.	.	.
Template SS confidence
										84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	L	I	G	E	I	L	A	F	R	L	G	K	E	T	I	L	L	R	T	G	W	T	A	F	D	E	E	K	T	E	L	I	N	Q	T	V	T	C	H	I	D	L	I	L	Q	G	L	S	Q	R
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	D	N	C	H	G	Q	Y	L	A	A	T	R	Y	F	V	D	.	.	.	.	.	.	.	.	.	.	H	P	E	R	W	Q	Q	A	H	E	R	S	A	S	F	A	L	F	W	N	A	X	A	V	R
Template Known Secondary structure																			.	.	.	.	.	.	.	.	.	.	S	G	G	G	G	G																	B
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.											170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions