Job Description P0ACU0 Confidence 99.80% Date Thu Jan 5 11:19:02 GMT 2012 Rank 41 Aligned Residues 193 % Identity 15% Template c3npiB_ PDB info PDB header:gene regulation Chain: B: PDB Molecule:tetr family regulatory protein; PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution Resolution 2.96 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		A	K	K	Q	L	I	A	A	A	L	A	Q	F	G	E	Y	G	M	N	A	.	T	T	R	E	I	A	A	Q	A	G	Q	N	I	A	A	I	T	Y	Y	F	G	S	K	E	D	L	Y	L	A	C	A	Q	W	I	A	D	F	I	G	E	Q	F	R	P	H	A	E	E	A	E	R	L	F	A	Q	P	Q	P	D
Query Conservation																						.
Alig confidence																						.																																																							.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		S	T	D	T	V	L	D	I	A	L	S	L	F	S	E	L	G	F	S	D	A	K	L	E	A	I	A	K	K	S	G	X	S	K	R	X	I	H	Y	H	F	G	D	K	R	G	L	Y	I	C	C	L	E	E	A	V	R	R	L	R	P	T	A	E	E	X	Y	L	A	S	A	V	P	V	E	.	.	.	.	.
Template Known Secondary structure																																												S																	S			T	T	T	T			S							.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		R	A	A	I	R	E	L	I	L	R	A	C	R	N	M	I	K	L	L	T	Q	D	D	T	V	N	L	S	K	F	I	S	R	E	Q	L	S	P	T	A	A	Y	H	L	V	H	E	Q	V	I	S	P	L	H	S	H	L	T	R	L	I	A	A	W	T	G	C	D	A	.	.	N	D	T	R	M	I	L	H	T
Query Conservation																																																																							.	.
Alig confidence		.	.	.	.	.	.																.																																																.	.
Template Conservation		.	.	.	.	.	.																.
Template Sequence		.	.	.	.	.	.	G	V	R	T	I	V	E	A	V	F	H	R	Y	V	Q	.	H	P	E	A	V	R	X	L	Q	X	E	N	L	H	H	Y	G	K	V	A	E	A	S	P	L	S	D	Q	S	A	I	T	L	Q	L	D	R	L	L	X	L	G	Q	D	A	G	A	F	R	P	G	I	S	A	Q	D	V	F
Template Known Secondary structure		.	.	.	.	.	.																.														S		T	T			T	T	S			S	S																			T	T	S	S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.																.
Template SS confidence
								93	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	L	I	G	E	I	L	A	F	R	L	G	K	E	T	I	L	L	R	T	G	W	T	A	F	D	E	E	K	T	E	L	I	N	Q	T	V	T	C	H	I	D	L	I	L	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	I	A	S	I	A	V	F	R	I	N	S	R	S	T	T	L	N	L	Y	G	I	D	X	X	N	G	D	N	T	D	G	X	R	R	X	A	V	D	T	V	L	A	F	L	T	S
Template Known Secondary structure														T												T	T	S																				T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions