Job Description P0ACU0 Confidence 99.79% Date Thu Jan 5 11:19:02 GMT 2012 Rank 52 Aligned Residues 194 % Identity 10% Template c3nnrA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a tetr-family transcriptional regulator2 (maqu_3571) from marinobacter aquaeolei vt8 at 2.49 a resolution Resolution 2.49 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		Q	A	K	K	Q	L	I	A	A	A	L	A	Q	F	G	E	Y	G	M	N	A	.	T	T	R	E	I	A	A	Q	A	G	Q	N	I	A	A	I	T	Y	Y	F	G	S	K	E	D	L	Y	L	A	C	A	Q	W	I	A	D	F	I	G	E	Q	F	R	P	H	A	E	E	A	E	R	L	F	A	Q	P	Q	P
Query Conservation																							.
Alig confidence																							.																																																				.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		K	T	R	D	K	I	L	L	S	S	L	E	L	F	N	D	K	G	E	R	N	I	T	T	N	H	I	A	A	H	L	A	I	S	P	G	N	L	Y	Y	H	F	R	N	K	S	D	I	I	Y	E	I	F	Q	E	Y	E	K	L	V	D	Y	Y	L	D	I	P	E	D	R	P	I	T	.	.	.	.	.	.	.
Template Known Secondary structure																				G	G	G											T											S	S																				T				S	S	S				.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	A	A	I	R	E	L	I	L	R	A	C	R	N	M	I	K	L	L	T	Q	D	D	T	V	N	L	S	K	F	I	S	R	E	Q	L	S	P	T	A	A	Y	H	L	V	H	E	Q	V	I	S	P	L	H	S	H	L	T	R	L	I	A	A	W	T	G	C	D	A	N	D	T	R	M	I	L	H	T	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	L	E	D	X	T	F	Y	L	E	S	V	F	D	G	L	W	S	Y	R	F	F	H	R	D	L	E	Y	L	L	D	S	D	P	R	L	R	Q	D	Y	R	E	F	T	N	R	C	L	A	A	I	N	R	I	F	A	K	L	A	D	A	G	I	I	Q	P	Q	P	E	D	L	R	S
Template Known Secondary structure		.	.	.	.	.	.	.	.																		T						S																																				T	T	S	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.					.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		A	L	I	G	E	I	L	A	F	R	L	G	K	E	T	I	L	L	R	T	G	W	T	A	F	D	E	E	K	T	E	L	I	N	Q	T	V	T	C	H	I	.	.	.	.	D	L	I	L	Q	G	L	S	Q	R
Query Conservation																																											.	.	.	.
Alig confidence																											.																.	.	.	.
Template Conservation																											.
Template Sequence		A	X	S	L	N	V	W	L	V	I	T	N	W	X	A	F	L	K	T	A	H	L	T	E	L	.	K	Q	G	I	Y	Q	V	L	T	L	E	V	P	Y	L	T	P	E	Y	R	E	R	V	L	A	L	R	E	K
Template Known Secondary structure													T												S	G	.	G	G										G	G	G	B														T
Template Predicted Secondary structure																											.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions