Job Description P0ACU0 Confidence 99.81% Date Thu Jan 5 11:19:02 GMT 2012 Rank 34 Aligned Residues 196 % Identity 17% Template c2uxoB_ PDB info PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator ttgr; PDBTitle: ttgr in complex with tetracycline Resolution 2.7 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		T	I	K	G	E	Q	A	K	K	Q	L	I	A	A	A	L	A	Q	F	G	E	Y	G	M	N	A	.	T	T	R	E	I	A	A	Q	A	G	Q	N	I	A	A	I	T	Y	Y	F	G	S	K	E	D	L	Y	L	A	C	A	Q	W	I	A	D	F	I	G	E	Q	F	R	P	H	A	E	E	A	E	R	L	F
Query Conservation																												.
Alig confidence																												.																																																					.
Template Conservation																																																																																	.
Template Sequence		K	E	E	A	Q	E	T	R	A	Q	I	I	E	A	A	E	R	A	F	Y	K	R	G	V	A	R	T	T	L	A	D	I	A	E	L	A	G	V	T	R	G	A	I	Y	W	H	F	N	N	K	A	E	L	V	Q	A	L	L	D	S	L	H	E	T	H	D	H	L	A	R	A	S	E	S	E	D	E	V	D	.
Template Known Secondary structure				S		S																			S	T	T											T	S							T	T		S	S												T	T	G	G	G										T	T		S		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		A	Q	P	Q	P	D	R	A	A	I	R	E	L	I	L	R	A	C	R	N	M	I	K	L	L	T	Q	D	D	T	V	N	L	S	K	F	I	S	R	.	.	E	Q	L	S	P	T	A	A	Y	H	L	V	H	E	Q	V	I	S	P	L	H	S	H	L	T	R	L	I	A	A	W	T	G	C	D	A	N	D	T
Query Conservation																																									.	.
Alig confidence		.	.	.	.	.	.	.	.																																.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	P	L	G	C	M	R	K	L	L	L	Q	V	F	N	E	L	V	L	D	A	R	T	R	R	I	N	E	I	L	H	H	K	C	E	F	T	D	D	M	C	E	I	R	Q	Q	R	Q	S	A	V	L	D	C	H	K	G	I	T	L	A	L	A	N	A	V	R	R	G	Q	L	P	G
Template Known Secondary structure		.	.	.	.	.	.	.	.																																S				B	T	T	B																												T	T	S	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
				164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	M	I	L	H	T	H	A	L	I	G	E	I	L	A	F	R	L	G	K	E	T	I	L	L	R	T	G	W	T	A	F	D	E	E	K	T	E	L	I	N	Q	T	V	T	C	H	I	D	L	I	L	Q	G	L	S	Q	R	S
Query Conservation		.	.
Alig confidence		.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	D	A	E	R	A	A	V	A	M	F	A	Y	V	D	G	L	I	R	R	W	L	L	L	P	D	S	V	D	L	L	G	D	.	.	.	.	.	.	.	.	.	.	.	V	E	K	W	V	D	T	G	L	D	M	L	R	L	S	P
Template Known Secondary structure		S																									G	G	G			T	T	T	T	.	.	.	.	.	.	.	.	.	.	.																G
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190												.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions