Job Description P0ACU0 Confidence 99.82% Date Thu Jan 5 11:19:02 GMT 2012 Rank 26 Aligned Residues 193 % Identity 13% Template c2f07A_ PDB info PDB header:transcription Chain: A: PDB Molecule:yvdt; PDBTitle: crystal structure of yvdt from bacillus subtilis Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		P	A	M	T	I	K	G	E	Q	A	K	K	Q	L	I	A	A	A	L	A	Q	F	G	E	Y	G	M	N	A	.	T	T	R	E	I	A	A	Q	A	G	Q	N	I	A	A	I	T	Y	Y	F	G	S	K	E	D	L	Y	L	A	C	A	Q	W	I	A	D	F	I	G	E	Q	F	R	P	H	A	E	E	A	E
Query Conservation																															.
Alig confidence																															.
Template Conservation
Template Sequence		F	T	M	P	K	Q	T	S	G	K	Y	E	K	I	L	Q	A	A	I	E	V	I	S	E	K	G	L	D	K	A	S	I	S	D	I	V	K	K	A	G	T	A	Q	G	T	F	Y	L	Y	F	S	S	K	N	A	L	I	P	A	I	A	E	N	L	L	T	H	T	L	D	Q	I	K	G	R	L	H	G	D	E
Template Known Secondary structure										S																		T	T	T											T	S										S	S	S	T	T																				T			S
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	F	A	Q	P	Q	P	D	R	A	A	I	R	E	L	I	L	R	A	C	R	N	M	I	K	L	L	T	Q	D	D	T	V	N	L	S	K	F	I	S	R	E	Q	L	S	P	T	A	A	Y	H	L	V	H	E	Q	V	I	S	P	L	H	S	H	L	T	R	L	I	A	A	W	T	G	C	D	A	N	D
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.																																																										.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.																																																										.	.
Template Sequence		D	F	W	T	.	.	.	.	.	.	.	.	.	.	.	V	L	D	I	L	I	D	E	T	F	L	I	T	E	R	H	K	D	I	I	V	L	C	Y	S	G	L	A	I	D	H	S	M	E	K	W	E	T	I	Y	Q	P	Y	Y	S	W	L	E	K	I	I	N	K	A	I	A	N	.	.	H	E	V	T	E	G
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.																														T	T																										T	.	.	T	S	B		T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.																																																										.	.
Template SS confidence
		79	80	.	.												.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	M	I	L	H	T	H	A	L	I	G	E	I	L	A	F	R	L	G	K	E	T	I	L	L	R	T	G	W	T	A	F	D	E	E	K	T	E	L	I	N	Q	T	V	T	C	H	I	D	L	I	L	Q	G	L	S
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.
Template Sequence		I	N	S	K	W	T	A	R	T	I	I	N	L	V	E	N	T	A	E	R	F	Y	.	.	.	.	.	.	.	.	.	.	I	G	F	E	Q	D	E	N	V	E	V	Y	K	K	E	I	F	T	F	L	K	R	S	L	G
Template Known Secondary structure																								.	.	.	.	.	.	.	.	.	.	T	S				S	S																		B
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.											.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions