 |
Job Description | P0ACU0 | Confidence | 56.62% | Date | Thu Jan 5 11:19:02 GMT 2012 |
Rank | 378 | Aligned Residues | 58 |
% Identity | 14% | Template | c1hlvA_ |
PDB info |
PDB header:dna binding protein/dna | Chain: A: PDB Molecule:major centromere autoantigen b; |
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
|
Resolution | 2.50 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | N | N | P | A | M | T | I | K | G | E | Q | A | K | K | Q | L | I | A | A | A | L | A | Q | F | G | E | Y | G | M | N | A | T | T | R | E | I | A | A | Q | A | G | Q | N | I | A | A | I | T | Y | Y | F | G | S | K | E | D | L | Y | L | A | C | A | Q |
Query Conservation |   |
|   |   |
|   |   |   |   |
|   |   |   |
|
|   |   |
|
|   |
|
|   |   |
|   |   |
|   |
|   |   |   |
|   |   |   |
|
|   |   |
|
|
|
|   |   |   |
|
|   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|
| . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |
|   |   |
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
Template Sequence |   |
M | G | P | K | R | R | Q | L | T | F | R | E | K | S | R | I | I | . |
. |
. |
. |
. |
. |
Q | E | V | E | E | N | P | D | L | R | K | G | E | I | A | R | R | F | N | I | P | P | S | T | L | S | T | I | L | K | N | K | R | A | I | L | A | S | E | R | K |
Template Known Secondary structure |   |
|
|
| S | S |
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|