 |
Job Description | P76486 | Confidence | 21.19% | Date | Thu Jan 5 12:23:32 GMT 2012 |
Rank | 70 | Aligned Residues | 67 |
% Identity | 24% | Template | c2olvA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:penicillin-binding protein 2; |
PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex
|
Resolution | 2.80 Å |
|
 |
  |   |
92 | . | . | . | . | . | . | . | |
|
|
|
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | S | I | E | D | Q | D | F | . |
. |
. |
. |
A | A | N | L | F | R | V | A | R | K | C | L | S | T | G | R | L | D | D | A | L | P | L | L | Q | R | A | T | E | Q | L | P | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | S | E | Y | W | L | A | L | A | I | Q | Y | R | R | C | K | K | T | E | A | A | A |
Query Conservation |   |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |
|
|
|   |
|   |
|
|
|   |   |   |
|   |
|
|   |   |
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|   |
|   |   |   |   |   |   |
|   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|
|   |   |   |
|
| . | . |   |
|
|
|
Template Sequence |   |
L | A | T | E | D | N | R | F | Y | E | H | G | A | L | D | Y | K | R | L | F | G | A | I | G | K | G | A | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
T | L | T | Q | Q | V | V | K | D | A | F | L | S | Q | H | K | S | I | G | R | K | A | Q | E | A | Y | L | S | Y | R | L | E | Q | E | Y | S | K | . |
. |
D | D | I | F |
Template Known Secondary structure |   |
 |  |  |  |
| T | T |
| S | S |
| S | S | S |
| S |  |  |  |  |  |  |  | T |
|
|
|
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  | T | T | T |
|
| S |
|
| T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|  | . | . |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  | . | . |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
111 | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | |
|
. | . | . | . |
  |
  |   |
155 | . | . | . | . | 160 | |
. | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  | . |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | A | A | L | N | A | . |
Y | L | G | N | W | A | F | G | V |
Query Conservation |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|   |
|   |
|
|   |
|   |   |
|
|
Template Sequence |   |
Q | V | Y | L | N | K | I | Y | Y | S | D | G | V | T | G | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |
| B |
| S | T | T |
| B | S |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
189 | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|