 |
Job Description | P69795 | Confidence | 66.02% | Date | Thu Jan 5 12:11:58 GMT 2012 |
Rank | 61 | Aligned Residues | 102 |
% Identity | 17% | Template | c1e5dA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; |
PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
|
Resolution | 2.5 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | |
. | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
|
|
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | 60 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | E | K | K | H | I | Y | L | F | C | S | A | G | . |
M | S | T | S | L | L | V | S | K | M | R | A | Q | A | E | K | Y | E | V | P | V | I | I | E | A | . |
. |
. |
F | P | E | T | L | A | G | E | K | G | Q | N | A | D | V | V | L | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
G | P | Q | I | A | Y | M | L | P | E | I |
Query Conservation |   |
|   |
|
|
|
|
|
|   |
|   |   |
| . |   |
|
|
|   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |
| . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|
|
|   |
|   |   |
|   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |
|   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
Template Sequence |   |
K | P | T | N | K | V | V | I | F | Y | D | S | M | W | H | S | T | E | K | M | A | R | V | L | A | E | S | F | R | D | E | G | C | T | V | K | L | M | W | C | K | A | C | H | H | S | Q | I | M | S | E | I | S | D | A | G | A | V | I | V | G | S | P | T | H | N | N | G | I | L | P | Y | V | A | G | T | L | Q | Y | I |
Template Known Secondary structure |   |
|
|
| S |  |  |  |  |  |  |
|
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  | T | T | T | S |
|  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  |
|
|
| B | T | T | B |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . |
  |
  |   |
68 | . | 70 | . | . | |
. | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
| . |
|
|
|  |  |  |  |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | R | L | L | P | . |
N | K | P | V | E | V | I | D | S | L | L | Y | G | K | V | D | G | L | G | V | L | K | A | A | V | A | A | I | K | K | A | A | A | N |
Query Conservation |   |
  |   |   |   |   | . |   |   |
|
|   |   |
|   |   |   |   |
|
|   |
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|
|   |
| . | . | . | . |   |
|   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |
Template Sequence |   |
K | G | L | R | P | Q | N | K | I | G | G | A | F | G | S | . |
. |
. |
. |
F | G | W | S | G | E | S | T | K | V | L | A | E | W | L | T | G | M | G | F | D |
Template Known Secondary structure |   |
 |  | T |
|
|
| S |
|  |  |  |  |  |  |  | . | . | . | . |  | S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| B |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|  |  |  |  |  |
| . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | |
|
|
|
. | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|