Secondary structure and disorder prediction

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Sequence

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Secondary structure

SS confidence

Disorder

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Disorder confidence

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70

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Secondary structure

SS confidence

Disorder

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Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vf6 chain A Region: 14 - 27 Aligned: 14 Modelled: 14 Confidence: 24.1% Identity: 36% Fold: L27 domain Superfamily: L27 domain Family: L27 domain Phyre2 PDB 1vf6 chain B Region: 14 - 27 Aligned: 14 Modelled: 14 Confidence: 23.6% Identity: 36% PDB header:protein binding/protein transport Chain: B: PDB Molecule:pals1-associated tight junction protein; PDBTitle: 2.1 angstrom crystal structure of the pals-1-l27n and patj2 l27 heterodimer complex Phyre2 PDB 1y76 chain A domain 1 Region: 14 - 27 Aligned: 14 Modelled: 14 Confidence: 16.7% Identity: 43% Fold: L27 domain Superfamily: L27 domain Family: L27 domain Phyre2 PDB 2pa2 chain A domain 1 Region: 7 - 18 Aligned: 12 Modelled: 12 Confidence: 10.9% Identity: 33% Fold: alpha/beta-Hammerhead Superfamily: Ribosomal protein L16p/L10e Family: Ribosomal protein L10e Phyre2 1 d1vf6a_ 2 c1vf6B_ 3 d1y76a1 4 d2pa2a1

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vf6a_ 24.1 36 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 2 c1vf6B_ 23.6 36 PDB header:protein binding/protein transport Chain: B: PDB Molecule:pals1-associated tight junction protein; PDBTitle: 2.1 angstrom crystal structure of the pals-1-l27n and patj2 l27 heterodimer complex 3 d1y76a1 16.7 43 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 4 d2pa2a1 10.9 33 Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L10e

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0