Job Description P75898 Confidence 100.00% Date Thu Jan 5 12:15:49 GMT 2012 Rank 5 Aligned Residues 362 % Identity 19% Template c3b9nB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) Resolution 2.70 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.						.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.										.	.	.	80	.	.
Predicted Secondary structure																	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Query Sequence		R	L	M	M	K	I	G	V	F	V	P	I	G	N	N	.	.	.	.	.	G	W	L	I	S	T	H	A	P	Q	Y	M	P	T	F	E	L	N	K	A	I	V	Q	K	A	E	H	Y	H	F	D	F	A	L	S	M	I	K	L	R	G	F	G	G	K	.	.	.	.	.	.	.	.	.	T	E	F	W	D	H
Query Conservation																	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	K	I	H	I	N	A	F	E	M	N	C	V	G	H	I	A	H	G	L	W	R	H	P	E	N	Q	R	H	R	Y	T	D	L	N	Y	W	T	E	L	A	Q	L	L	E	K	G	K	F	D	A	L	F	L	A	D	V	V	G	I	Y	D	V	Y	R	Q	S	R	D	T	A	V	R	E	A	V	Q	I	P
Template Known Secondary structure													S	B	S	B	S	S	S	T	T	G	G	G	S	T	T			G	G	G	T	T															T	T		S								S	S					G	G	G	S	S						T	T	B	S		S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	E	S	F	T	L	M	A	G	L	A	A	V	T	S	R	I	Q	I	Y	A	T	A	A	T	L	T	L	P	P	A	I	V	A	R	M	A	A	T	I	D	S	I	S	G	G	R	F	G	V	N	L	V	T	G	W	Q	K	P	E	Y	E	Q	M	G	I	W	P	G	D	D	Y	F	S	R	R	Y	D	Y
Query Conservation
Alig confidence																																																																								.
Template Conservation																																																																								.
Template Sequence		V	N	D	P	L	M	L	I	S	A	M	A	Y	V	T	K	H	L	A	F	A	V	T	F	S	T	T	Y	E	H	P	Y	G	H	A	R	R	M	S	T	L	D	H	L	T	K	G	R	I	A	W	N	V	V	T	S	H	L	P	S	A	D	K	N	F	G	I	K	K	I	.	L	E	H	D	E	R	Y	D	L
Template Known Secondary structure		B			S	G	G	G									S	S									S	S	S	S																T	T	S																		T	T		S	S		.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160
		163	.	.	.	.	.	.	170	.	.	.	.	.	.																							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		L	T	E	Y	V	Q	V	L	R	D	L	W	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	S	D	F	K	G	D	F	F	T	M	N	D	C	R	V	S	P	Q	P	.	S	V	P	M	K	V	I	C	A	G	Q	S	D	A	G	M	A	F	S	A	R	Y
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		A	D	E	Y	L	E	V	C	Y	K	L	W	E	G	S	W	E	D	N	A	V	I	R	D	I	E	N	N	I	Y	T	D	P	S	K	V	H	E	I	N	H	S	G	K	Y	F	E	V	P	G	P	H	L	C	E	P	S	P	Q	R	T	P	V	I	Y	Q	A	G	M	S	E	R	G	R	E	F	A	A	K	H
Template Known Secondary structure															T	S	B		T	T						T	T	T	T					G	G	G	B								S	S								S	S				T	T	S	S									S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290									.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.
Query Sequence		A	D	F	N	F	C	F	G	K	G	V	N	T	P	T	A	F	A	P	T	A	A	R	M	K	Q	A	A	E	Q	T	G	R	D	V	G	S	Y	V	L	F	M	V	I	A	D	E	T	D	D	A	A	R	A	K	W	E	H	Y	K	A	G	A	D	E	E	A	L	S	W	L	.	.	.	.	.	.	.	.	T
Query Conservation																																																																									.	.	.	.	.	.	.	.
Alig confidence																																																																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	C	V	F	L	G	G	K	D	V	E	T	L	K	F	F	V	D	D	I	R	K	R	A	K	K	Y	G	R	N	P	D	H	I	K	M	F	A	G	I	C	V	I	V	G	K	T	H	D	E	A	M	E	K	L	N	S	F	Q	K	Y	W	S	L	E	G	H	L	A	H	Y	G	G	G	T	G	Y	D	L
Template Known Secondary structure			S						B	S	S															T	G	G	G	T			G	G	G													S	S													T	T																		T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	S	Q	K	D	T	R	S	G	T	D	T	N	V	R	Q	M	A	D	P	T	S	A	V	N	I	N	M	G	T	L	V	G	S	Y	A	S	V	A	R	M	L	D	E	V	A	S	V	P	G	A	E	G	V	L	L	T	F	D	D	F	L	S	G	I	E	T	F	G	E	R	I	Q	P	L	M	Q	C	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	Y	S	S	N	D	Y	I	G	S	I	S	V	G	E	I	I	N	N	M	S	K	L	D	G	K	W	F	K	L	S	V	G	T	P	K	K	V	A	D	E	M	Q	Y	L	V	E	E	A	G	I	D	G	F	N	L	V	Q	Y	V	S	P	G	T	F	V	D	F	I	E	L	V	V	P	E	L	Q	K	R
Template Known Secondary structure		T	S	S		T	T		B	S	S	S	S	B									T	S	G	G	G	S	S	B						S																									S	S	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		372	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	L	P	A	L	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	Y	R	V	D	Y	E
Template Known Secondary structure		T		S		S	S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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