Job Description P75898 Confidence 100.00% Date Thu Jan 5 12:15:49 GMT 2012 Rank 2 Aligned Residues 347 % Identity 21% Template c1tvlA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protein ytnj; PDBTitle: structure of ytnj from bacillus subtilis Resolution 2.10 Å

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		19	20	.	.	.	.	.	.	.	.				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		M	M	K	I	G	V	F	V	P	I	.	.	.	G	N	N	G	W	L	I	S	T	H	A	P	Q	Y	M	P	T	F	E	L	N	K	A	I	V	Q	K	A	E	H	Y	H	F	D	F	A	L	S	M	I	K	L	R	G	F	G	G	K	T	E	F	W	D	H	N	L	E	S	F	T	L	M	A	G	L	A	A
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		F	I	Q	F	G	A	M	I	H	G	V	G	G	T	T	D	G	W	R	H	P	D	V	D	P	S	A	S	T	N	I	E	F	Y	M	K	K	A	Q	T	A	E	K	G	L	F	S	F	I	F	I	A	D	G	L	F	I	S	E	K	S	I	P	H	F	L	N	R	F	E	P	I	T	I	L	S	A	L	A	S
Template Known Secondary structure											T	T		S	S	S	S	G	G	G	S	T	T			T	T	G	G	G															T	T		S								S				T	T	S						S													T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	S	R	I	Q	I	Y	A	T	A	A	T	L	T	L	P	P	A	I	V	A	R	M	A	A	T	I	D	S	I	S	G	G	R	F	G	V	N	L	V	T	G	W	Q	K	P	E	Y	E	Q	M	G	I	W	P	G	D	D	Y	F	S	R	R	Y	D	Y	L	T	E	Y	V	Q	V	L	R	D	L	W	G
Query Conservation
Alig confidence																																																											.
Template Conservation																																																											.
Template Sequence		V	T	K	N	I	G	L	V	G	T	F	S	T	S	F	T	E	P	F	T	I	S	R	Q	L	M	S	L	D	H	I	S	G	G	R	A	G	W	N	L	V	T	S	P	Q	E	G	A	A	R	N	H	S	K	S	N	L	.	P	E	H	T	E	R	Y	E	I	A	Q	E	H	L	D	V	V	R	G	L	W	N
Template Known Secondary structure		T		S	S									T	T	T	S																T	T	S								S								T	T	T	T		S	S		.																						T
Template Predicted Secondary structure																																																											.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		176																						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	S	D	F	K	G	D	F	F	T	M	N	D	C	R	V	S	P	Q	P	.	S	V	P	M	K	V	I	C	A	G	Q	S	D	A	G	M	A	F	S	A	R	Y	A	D	F	N	F	C	F	G	K	G	V	N	T	P
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		S	W	E	H	D	A	F	I	H	N	K	K	T	G	Q	F	F	D	Q	A	K	L	H	R	L	N	H	K	G	K	Y	F	Q	V	E	G	P	L	N	I	G	R	S	K	Q	G	E	P	V	V	F	Q	A	G	S	S	E	T	G	R	Q	F	A	A	K	N	A	D	A	I	F	T	H	S	N	S	L	E	E	T
Template Known Secondary structure		S	B		T	T					B	T	T	T	T	B		S		G	G	G	B								S	S								S	S			B	T	T	B	S									S												S							S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	F	A	P	T	A	A	R	M	K	Q	A	A	E	Q	T	G	R	D	V	G	S	Y	V	L	F	M	V	I	A	D	E	T	D	D	A	A	R	A	K	W	E	H	Y	K	A	G	A	D	E	E	A	L	S	W	L	T	E	Q	S	Q	K	D	T	R	S	G	T	D	T	N	V	R	Q	M	A	D	P	T
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	F	Y	A	D	V	K	S	R	A	A	D	E	G	R	D	P	S	S	V	R	I	F	P	G	I	S	P	I	V	A	D	T	E	E	E	A	E	K	K	Y	R	E	F	A	E	L	I	.	.	.	.	.	.	.	.	.	.	.	P	I	E	N	A	V	T	E	A	K	A	R	N	L	T	L	R	E	V	A
Template Known Secondary structure															T	T			G	G	G	S												S	S													T	T	S	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G							S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.												.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	V	N	I	N	M	G	T	L	V	G	S	Y	A	S	V	A	R	M	L	D	E	V	A	S	V	P	G	A	E	G	V	L	L	T	F	D	D	F	L	S	G	I	E	T	F	G	E	R	I	Q	P	L	M	Q	C	R	A	H	L	P	A	L	T
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		Q	E	M	A	F	P	R	T	L	F	I	G	T	P	E	R	V	A	S	L	I	E	T	W	F	N	A	E	A	A	D	G	F	I	V	.	G	S	D	I	P	G	T	L	D	A	F	V	E	K	V	I	P	I	L	Q	E	R	G	L	Y	R	Q	D	Y
Template Known Secondary structure						S				S	S																	T	T	S		S					.				S	T	T																T	T	S	S		S	S
Template Predicted Secondary structure																																					.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.		.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions