Job Description P0ABG4 Confidence 4.55% Date Thu Jan 5 11:15:27 GMT 2012 Rank 19 Aligned Residues 317 % Identity 14% Template c3rkoL_ PDB info PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.								.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query Sequence		G	V	Y	L	I	L	A	F	I	L	A	I	I	T	L	R	L	P	M	E	F	W	Q	R	Y	S	A	T	M	L	L	G	S	I	I	L	L	M	I	V	L	V	V	G	S	S	V	K	G	A	S	.	.	.	.	.	.	.	R	W	I	D	L	G	L	L	R	I	Q	P	A	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	L	P	L	I	G	F	V	L	L	A	F	S	R	G	R	W	S	E	N	V	S	A	I	V	G	V	G	S	V	G	L	A	A	L	V	T	A	F	I	G	V	D	F	F	A	N	G	E	Q	T	Y	S	Q	P	L	W	T	W	M	S	V	G	D	F	N	I	G	F	N	L	V	L	D	G	L	S	L	T
Template Known Secondary structure																	S		S																														T	T	S														S	S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																								.	.	.	.																		.	.	.	.	.
Query SS confidence																																																								.	.	.	.																		.	.	.	.	.
Query Sequence		E	L	T	K	L	S	L	F	C	Y	I	A	N	Y	L	V	R	K	G	D	E	V	R	N	N	L	R	G	F	L	K	P	M	G	V	I	L	V	L	A	V	L	L	L	A	Q	P	D	L	G	T	V	V	V	.	.	.	.	L	F	V	T	T	L	A	M	L	F	L	A	G	A	K	L	W	.	.	.	.	.
Query Conservation																																																								.	.	.	.																		.	.	.	.	.
Alig confidence																																																								.	.	.	.																		.	.	.	.	.
Template Conservation
Template Sequence		M	L	S	V	V	T	G	V	G	F	L	I	H	M	Y	A	S	W	Y	M	R	G	E	E	G	Y	S	R	F	F	A	Y	T	N	L	F	I	A	S	M	V	V	L	V	L	A	D	N	L	L	L	M	Y	L	G	W	E	G	V	G	L	C	S	Y	L	L	I	G	F	Y	Y	T	D	P	K	N	G	A	A	A
Template Known Secondary structure																					T	S	S		S																					T	B	S	B	S																			T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
								221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	Q	F	I	A	I	I	G	M	G	I	S	A	V	V	L	L	I	L	A	E	P	Y	R	I	R	R	V	T	A	F	W	N	P	W	E	D	P	F	G	S	G	Y	Q	L	T	Q	S	L	M	A	F	G	R	G	E	L	W	G	Q	G	L	G	N	S	V	Q	K	L	E	Y	L	P	E	A
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																																.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.
Template Sequence		M	K	A	F	V	V	T	R	V	G	D	V	F	L	A	F	A	L	F	I	L	Y	N	E	L	G	T	L	N	F	R	E	M	V	E	L	A	P	A	H	F	A	D	G	N	N	M	L	M	W	A	T	L	M	L	L	G	G	A	V	G	K	S	A	Q	L	P	L	Q	.	.	.	.	.	T	W	L	A	D	A
Template Known Secondary structure																										T	S			B													T	T		S	S	S																	T		T	T	S	T	.	.	.	.	.	T
Template Predicted Secondary structure																																																																							.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.						.	.	.	240	.	.
		295	.	.							.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.												.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	T	D	.	.	.	.	.	.	F	I	F	A	I	I	G	E	E	L	G	Y	V	G	V	V	L	A	L	.	.	.	.	.	.	.	.	.	.	.	L	M	V	F	F	V	A	F	R	A	M	S	I	G	R	K	A	L	E	I	D	H	R	F	S	G	F	L	A	C	S	I	G	I	W	F	S	F	Q	A	L
Query Conservation					.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.																							.																.	.	.
Template Conservation																																																															.																.	.	.
Template Sequence		M	A	G	P	T	P	V	S	A	L	I	H	A	A	T	M	V	T	A	G	V	Y	L	I	A	R	T	H	G	L	F	L	M	T	P	E	V	L	H	L	V	G	I	V	G	A	V	T	L	L	L	A	G	F	A	A	L	V	Q	T	D	.	I	K	R	V	L	A	Y	S	T	M	S	Q	I	G	Y	.	.	.
Template Known Secondary structure		T	T	S											T	T												T						T	S																							T	T		S	B	.																.	.	.
Template Predicted Secondary structure																																																															.																.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	V	G	A	A	A	G	M	L	P	T	K	G	L	T	L	P	L	I	S	Y	G	G	S	S	L	L	I	M	S	T	A	I	M	M	L	L	R	I	D	Y	E	T	R	L	E	K	A	Q	A	F	V	R	G	S
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	M	F	L	A	L	G	V	Q	A	W	D	A	A	I	F	H	L	M	T	H	A	F	F	K	A	L	L	F	L	A	S	G	S	V	I	L	A	C	H	H	E	Q	N	I	F	K	M	G	G	L	R	K	S	I
Template Known Secondary structure		.	.							T	T																														T	T	S			B	S	T	T					T	T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions