Job Description P0A6P1 Confidence 100.00% Date Thu Jan 5 11:03:37 GMT 2012 Rank 2 Aligned Residues 279 % Identity 100% Template c3agqA_ PDB info PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii Resolution 3.22 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	S	L	V	K	E	L	R	E	R	T	G	A	G	M	M	D	C	K	K	A	L	T	E	A	N	G	D	I	E	L	A	I	E	N	M	R	K	S	G	A	I	K	A	A	K	K	A	G	N	V	A	A	D	G	V	I	K	T	K	I	D	G	N	Y	G	I	I	L	E	V	N	C	Q	T	D	F	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	S	L	V	K	E	L	R	E	R	T	G	A	G	M	M	D	C	K	K	A	L	T	E	A	N	G	D	I	E	L	A	I	E	N	M	R	K	S	G	A	I	K	A	A	K	K	A	G	N	V	A	A	D	G	V	I	K	T	K	I	D	G	N	Y	G	I	I	L	E	V	N	C	Q	T	D	F	V	A
Template Known Secondary structure				T	T	T	S	T	T								S	T	T	T	S	T	T	T	S	S	S	S	S												T	T								T	T	S													T	T										S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	A	G	F	Q	A	F	A	D	K	V	L	D	A	A	V	A	G	K	I	T	D	V	E	V	L	K	A	Q	F	E	E	E	R	V	A	L	V	A	K	I	G	E	N	I	N	I	R	R	V	A	A	L	E	G	D	V	L	G	S	Y	Q	H	G	A	R	I	G	V	L	V	A	A	K	G	A	D	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	A	G	F	Q	A	F	A	D	K	V	L	D	A	A	V	A	G	K	I	T	D	V	E	V	L	K	A	Q	F	E	E	E	R	V	A	L	V	A	K	I	G	E	N	I	N	I	R	R	V	A	A	L	E	G	D	V	L	G	S	Y	Q	H	G	A	R	I	G	V	L	V	A	A	K	G	A	D	E	E
Template Known Secondary structure		T	S																T	T	T			S	S							S									T	T	S		S													S	S							T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	K	H	I	A	M	H	V	A	A	S	K	P	E	F	I	K	P	E	D	V	S	A	E	V	V	E	K	E	Y	Q	V	Q	L	D	I	A	M	Q	S	G	K	P	K	E	I	A	E	K	M	V	E	G	R	M	K	K	F	T	G	E	V	S	L	T	G	Q	P	F	V	M	E	P	S	K	T	V	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	K	H	I	A	M	H	V	A	A	S	K	P	E	F	I	K	P	E	D	V	S	A	E	V	V	E	K	E	Y	Q	V	Q	L	D	I	A	M	Q	S	G	K	P	K	E	I	A	E	K	M	V	E	G	R	M	K	K	F	T	G	E	V	S	L	T	G	Q	P	F	V	M	E	P	S	K	T	V	G	Q
Template Known Secondary structure												T	T			S	B	S	S	T	T		S		T	T	T	T	T	T	T	T	T	T					T	T	T	T	T																					T	B	S	S	S	S	B		T	T	S	T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	K	E	H	N	A	E	V	T	G	F	I	R	F	E	V	G	E	G	I	E	K	V	E	T	D	F	A	A	E	V	A	A	M	S	K	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	K	E	H	N	A	E	V	T	G	F	I	R	F	E	V	G	E	G	I	E	K	V	E	T	D	F	A	A	E	V	A	A	M	S	K	Q	S
Template Known Secondary structure						S	S											T	T	T	T														T	T	T	T	T	G
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions