Job Description P36979 Confidence 100.00% Date Thu Jan 5 11:54:07 GMT 2012 Rank 1 Aligned Residues 333 % Identity 100% Template c3rfaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Resolution 2.05 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	N	L	L	D	L	N	R	Q	Q	M	R	E	F	F	K	D	L	G	E	K	P	F	R	A	D	Q	V	M	K	W	M	Y	H	Y	C	C	D	N	F	D	E	M	T	D	I	N	K	V	L	R	G	K	L	K	E	V	A	E	I	R	A	P	E	V	V	E	E	Q	R	S	S	D	G	T	I	K	W	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	N	L	L	D	L	N	R	Q	Q	M	R	E	F	F	K	D	L	G	E	K	P	F	R	A	D	Q	V	M	K	W	M	Y	H	Y	C	C	D	N	F	D	E	M	T	D	I	N	K	V	L	R	G	K	L	K	E	V	A	E	I	R	A	P	E	V	V	E	E	Q	R	S	S	D	G	T	I	K	W	A
Template Known Secondary structure					G	G	G													T	T																S					G	G	G		T	T	S																										T	T	S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	V	G	D	Q	R	V	E	T	V	Y	I	P	E	D	D	R	A	T	L	C	V	S	S	Q	V	G	C	A	L	E	C	K	F	C	S	T	A	Q	Q	G	F	N	R	N	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	K	I	V	G	A	A	K	V	T	G	Q	R	P	I	T	N	V	V	M	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	V	G	D	Q	R	V	E	T	V	Y	I	P	E	D	D	R	A	T	L	C	V	S	S	Q	V	G	C	A	L	E	C	K	F	C	S	T	A	Q	Q	G	F	N	R	N	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	K	I	V	G	A	A	K	V	T	G	Q	R	P	I	T	N	V	V	M	M
Template Known Secondary structure					T	T											S	S													S	S			T	T		G	G	G	T	T																													S	S		S		S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	G	E	P	L	L	N	L	N	N	V	V	P	A	M	E	I	M	L	D	D	F	G	F	G	L	S	K	R	R	V	T	L	S	T	S	G	V	V	P	A	L	D	K	L	G	D	M	I	D	V	A	L	A	I	S	L	H	A	P	N	D	E	I	R	D	E	I	V	P	I	N	K	K	Y	N	I	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	M	G	E	P	L	L	N	L	N	N	V	V	P	A	M	E	I	M	L	D	D	F	G	F	G	L	S	K	R	R	V	T	L	S	T	S	G	V	V	P	A	L	D	K	L	G	D	M	I	D	V	A	L	A	I	S	L	H	A	P	N	D	E	I	R	D	E	I	V	P	I	N	K	K	Y	N	I	E	T
Template Known Secondary structure		S	S	S		G	G	G														S	T	T	T	T				G	G	G						S																								S	S								S	G	G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	A	A	V	R	R	Y	L	E	K	S	N	A	N	Q	G	R	V	T	I	E	Y	V	M	L	D	H	V	N	D	G	T	E	H	A	H	Q	L	A	E	L	L	K	D	T	P	C	K	I	N	L	I	P	W	N	P	F	P	G	A	P	Y	G	R	S	S	N	S	R	I	D	R	F	S	K	V	L	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	A	A	V	R	R	Y	L	E	K	S	N	A	N	Q	G	R	V	T	I	E	Y	V	M	L	D	H	V	N	D	G	T	E	H	A	H	Q	L	A	E	L	L	K	D	T	P	C	K	I	N	L	I	P	W	N	P	F	P	G	A	P	Y	G	R	S	S	N	S	R	I	D	R	F	S	K	V	L	M	S
Template Known Secondary structure														T	T	T	T	T									B	T	T	T	T		S											T	T	T	S													T	T					B
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	F	T	T	I	V	R	K	T	R	G	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	F	T	T	I	V	R	K	T	R	G	D
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions