Job Description P36979 Confidence 99.61% Date Thu Jan 5 11:54:07 GMT 2012 Rank 12 Aligned Residues 208 % Identity 12% Template c2qgqF_ PDB info PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 Resolution 2.00 Å

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		129	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		C	K	F	C	S	T	A	.	Q	Q	G	F	N	R	N	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	K	I	V	G	A	A	K	V	T	G	Q	R	P	I	T	N	V	V	M	M	G	M	G	E	P	L	L	N	L	N	N	V	V	P	A	M	E	I	M	L	D	D	F	G	F	G	L	S	K	R	R
Query Conservation									.
Alig confidence									.																											.	.	.	.	.																																			.
Template Conservation																																				.	.	.	.	.																																			.
Template Sequence		R	P	Y	A	Y	V	K	I	S	D	G	S	L	R	S	R	S	I	E	D	I	T	R	E	V	E	D	L	L	K	E	G	K	K	.	.	.	.	.	E	I	I	L	V	A	Q	D	T	T	S	Y	G	I	D	L	Y	R	K	Q	A	L	P	D	L	L	R	R	L	N	S	L	N	G	.	E	F	W	I	R	V
Template Known Secondary structure			S							B						B																T	T			.	.	.	.	.							S		G	G	G	T	T	T	T	T	T	S	S												T	S	S	S	.	S
Template Predicted Secondary structure																																				.	.	.	.	.																																			.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		V	T	L	S	T	S	G	V	V	P	A	L	D	K	L	G	D	M	I	D	.	.	.	V	A	L	A	I	S	L	H	A	P	N	D	E	I	R	D	E	I	V	P	I	N	K	K	Y	N	I	E	T	F	L	A	A	V	R	R	Y	L	E	K	S	N	A	N	Q	G	R	V	T	I	E	Y	V	M	L	D	H
Query Conservation																						.	.	.
Alig confidence																						.	.	.																			.	.	.																							.	.	.	.
Template Conservation																																											.	.	.																							.	.	.	.
Template Sequence		X	Y	L	H	P	D	H	L	T	E	E	I	I	S	A	X	L	E	L	D	K	V	V	K	Y	F	D	V	P	V	Q	H	G	S	D	K	I	L	K	L	X	.	.	.	G	R	T	K	S	S	E	E	L	K	K	X	L	S	S	I	R	E	R	F	P	D	.	.	.	.	A	V	L	R	T	S	I	I	V	G
Template Known Secondary structure						G	G	G													T	T	B		S							B		S									.	.	.	T			S																	T	T	.	.	.	.										S
Template Predicted Secondary structure																																											.	.	.																							.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.				.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.					.	290	.	.	.	.	.	.	.	.
		285		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure			.																				.
Query SS confidence			.																				.
Query Sequence		V	.	N	D	G	T	E	H	A	H	Q	L	A	E	L	L	K	D	T	P	C	.	K	I	N	L	I	P	W	N	P	F	P	G	A	P	Y	G	R	S	S	N	S	R	I	D	R	F	S	K	V	L	M	S	Y	G	F	T	T	I	V	R	K	T	R	G	D	D	I	D	A	A	C	G	Q	L	A	G	D	V
Query Conservation			.																				.
Alig confidence			.																				.										.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	P	G	E	T	E	E	D	F	E	E	L	K	Q	F	V	E	E	I	Q	F	D	K	L	G	A	F	V	Y	S	D	.	.	.	.	.	.	.	K	V	D	P	E	X	A	K	R	R	Q	E	E	L	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure			T	T																			S										.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.								330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.																										.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	R	T	K	R	T	L	R	K	R	M	Q	G	E	A	I	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	E	I	S	N	S	R	L	D	R	F	V	G	K	K	L	K	F
Template Known Secondary structure												T	T	B	T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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