Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AAD8
DateThu Jan 5 11:12:39 GMT 2012
Unique Job ID268200a885b2820c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3lrcC_
Top template information
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
Confidence and coverage
Confidence:100.0% Coverage: 84%
374 residues ( 84% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAY
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Disorder  ?????????????????










































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   .........70.........80.........90.........100.........110.........120
Sequence  PIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTIT
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??????






































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   .........130.........140.........150.........160.........170.........180
Sequence  NTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISL
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?
???

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   .........190.........200.........210.........220.........230.........240
Sequence  SLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYE
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Disorder 

??





???

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???
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   .........250.........260.........270.........280.........290.........300
Sequence  KDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANH
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   .........310.........320.........330.........340.........350.........360
Sequence  FASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLVLKFGYKGDKTKVSL
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Disorder  ??
????????






































??????????
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   .........370.........380.........390.........400.........410.........420
Sequence  GKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRG
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   .........430.........440...
Sequence  RLDNVFVTVIGLLTILNIVYKLF
Secondary structure 


SS confidence 






















Disorder 




















??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3lrc chain C

3D model

Region: 16 - 441
Aligned: 374
Modelled: 374
Confidence: 100.0%
Identity: 15%
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)

Phyre2

PDB 3gia chain A

3D model

Region: 15 - 441
Aligned: 392
Modelled: 392
Confidence: 100.0%
Identity: 12%
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter

Phyre2

PDB 2jln chain A

3D model

Region: 4 - 442
Aligned: 402
Modelled: 431
Confidence: 99.9%
Identity: 10%
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter

Phyre2

PDB 3dh4 chain A

3D model

Region: 11 - 443
Aligned: 418
Modelled: 428
Confidence: 99.2%
Identity: 11%
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus

Phyre2

PDB 2xq2 chain A

3D model

Region: 26 - 440
Aligned: 402
Modelled: 402
Confidence: 99.0%
Identity: 11%
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt

Phyre2

PDB 2a65 chain A domain 1

3D model

Region: 15 - 441
Aligned: 405
Modelled: 425
Confidence: 97.5%
Identity: 12%
Fold: SNF-like
Superfamily: SNF-like
Family: SNF-like

Phyre2

PDB 2w8a chain C

3D model

Region: 12 - 421
Aligned: 380
Modelled: 387
Confidence: 97.4%
Identity: 9%
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate

Phyre2
1

c3lrcC_
2

c3giaA_
3

c2jlnA_
4

c3dh4A_
5

c2xq2A_
6

d2a65a1
7

c2w8aC_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3lrcC_



100.0 15 PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
2c3giaA_



100.0 12 PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
3c2jlnA_



99.9 10 PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
4c3dh4A_



99.2 11 PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
5c2xq2A_



99.0 11 PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
6d2a65a1



97.5 12 Fold:SNF-like
Superfamily:SNF-like
Family:SNF-like
7c2w8aC_



97.4 9 PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0