Secondary structure and disorder prediction |   |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
Sequence |   |
M | S | T | S | D | S | I | V | S | S | Q | T | K | Q | S | S | W | R | K | S | D | T | T | W | T | L | G | L | F | G | T | A | I | G | A | G | V | L | F | F | P | I | R | A | G | F | G | G | L | I | P | I | L | L | M | L | V | L | A | Y |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
Sequence |   |
P | I | A | F | Y | C | H | R | A | L | A | R | L | C | L | S | G | S | N | P | S | G | N | I | T | E | T | V | E | E | H | F | G | K | T | G | G | V | V | I | T | F | L | Y | F | F | A | I | C | P | L | L | W | I | Y | G | V | T | I | T |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |
Sequence |   |
N | T | F | M | T | F | W | E | N | Q | L | G | F | A | P | L | N | R | G | F | V | A | L | F | L | L | L | L | M | A | F | V | I | W | F | G | K | D | L | M | V | K | V | M | S | Y | L | V | W | P | F | I | A | S | L | V | L | I | S | L |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
Sequence |   |
S | L | I | P | Y | W | N | S | A | V | I | D | Q | V | D | L | G | S | L | S | L | T | G | H | D | G | I | L | I | T | V | W | L | G | I | S | I | M | V | F | S | F | N | F | S | P | I | V | S | S | F | V | V | S | K | R | E | E | Y | E |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
Sequence |   |
K | D | F | G | R | D | F | T | E | R | K | C | S | Q | I | I | S | R | A | S | M | L | M | V | A | V | V | M | F | F | A | F | S | C | L | F | T | L | S | P | A | N | M | A | E | A | K | A | Q | N | I | P | V | L | S | Y | L | A | N | H |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
? | ? | ? | ? |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 |
Sequence |   |
F | A | S | M | T | G | T | K | T | T | F | A | I | T | L | E | Y | A | A | S | I | I | A | L | V | A | I | F | K | S | F | F | G | H | Y | L | G | T | L | E | G | L | N | G | L | V | L | K | F | G | Y | K | G | D | K | T | K | V | S | L |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
? | ? |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 |
Sequence |   |
G | K | L | N | T | I | S | M | I | F | I | M | G | S | T | W | V | V | A | Y | A | N | P | N | I | L | D | L | I | E | A | M | G | A | P | I | I | A | S | L | L | C | L | L | P | M | Y | A | I | R | K | A | P | S | L | A | K | Y | R | G |
Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . |
Sequence |   |
R | L | D | N | V | F | V | T | V | I | G | L | L | T | I | L | N | I | V | Y | K | L | F |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |
Confidence Key |
High(9) |   |
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Low (0) |
? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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1 |
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PDB 3lrc chain C
Region: 16 - 441 Aligned: 374 Modelled: 374 Confidence: 100.0% Identity: 15% PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
Phyre2
2 |
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PDB 3gia chain A
Region: 15 - 441 Aligned: 392 Modelled: 392 Confidence: 100.0% Identity: 12% PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
Phyre2
3 |
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PDB 2jln chain A
Region: 4 - 442 Aligned: 402 Modelled: 431 Confidence: 99.9% Identity: 10% PDB header:membrane protein Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
Phyre2
4 |
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PDB 3dh4 chain A
Region: 11 - 443 Aligned: 418 Modelled: 428 Confidence: 99.2% Identity: 11% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
Phyre2
5 |
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PDB 2xq2 chain A
Region: 26 - 440 Aligned: 402 Modelled: 402 Confidence: 99.0% Identity: 11% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
Phyre2
6 |
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PDB 2a65 chain A domain 1
Region: 15 - 441 Aligned: 405 Modelled: 425 Confidence: 97.5% Identity: 12% Fold: SNF-like Superfamily: SNF-like Family: SNF-like
Phyre2
7 |
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PDB 2w8a chain C
Region: 12 - 421 Aligned: 380 Modelled: 387 Confidence: 97.4% Identity: 9% PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
Phyre2
|
Detailed template information |   |
Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
If you use the binding site
predictions from 3DLigandSite, please also cite: |
3DLigandSite: predicting ligand-binding sites using similar structures. |
Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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