Job Description P0AAD8 Confidence 99.97% Date Thu Jan 5 11:12:39 GMT 2012 Rank 1 Aligned Residues 374 % Identity 15% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

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		16	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		S	W	R	K	S	D	.	T	T	W	T	L	G	L	F	G	T	A	I	G	A	G	V	L	F	F	P	I	R	A	G	F	G	G	L	I	P	I	L	L	M	L	V	L	A	Y	P	I	A	F	Y	C	H	R	A	L	A	R	L	C	L	S	G	S	N	P	S	G	N	I	T	E	T	V	E	E	H	F	G	K
Query Conservation								.
Alig confidence								.																													.																																				.
Template Conservation																																					.																																				.
Template Sequence		D	A	H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	S	G	V	F	L	L	P	A	N	L	A	S	T	G	G	.	I	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y	A	.	Y	A	R	R	C	F	G	P
Template Known Secondary structure				S	S													T	T	S	S	S	S	T	T	T					T	T	S	S			.			S																						T	T				S	S		T	T	T	.	G	G	G	G	T	T
Template Predicted Secondary structure																																					.																																				.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	G	V	V	I	T	F	L	Y	F	F	A	I	C	P	L	L	W	I	Y	G	V	T	I	T	N	T	F	M	T	F	W	E	N	Q	L	G	F	A	P	L	N	R	G	F	V	A	L	F	L	L	L	L	M	A	F	V	I	W	F	G	K	D	L	M	V	K	V	M	S	Y	L	V	W	P	F	I	A	S
Query Conservation
Alig confidence																																						.	.
Template Conservation																																						.	.
Template Sequence		F	L	G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	I	L	.	.	K	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T	V	L	A	L	I	P
Template Known Secondary structure													T	T	T	T											T	G	G	G	S	S	S	S				.	.		S	S	S																			S		S
Template Predicted Secondary structure																																						.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	L	I	S	L	S	L	I	P	Y	W	N	S	A	V	I	D	Q	V	D	L	G	S	L	S	L	T	G	H	D	G	I	L	I	T	V	W	L	G	I	S	I	M	V	F	S	F	N	F	S	P	I	V	S	S	F	V	V	S	K	R	E	E	Y	E	K	D	F	G	R	D	F	T	E	R	K	C	S	Q
Query Conservation
Alig confidence											.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	G	I	A	V	F	G	W	.	.	.	.	.	F	W	F	R	G	E	T	Y	M	A	A	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	.	.	.	.	.	.	.	.	.	.	R	N	V	P	I
Template Known Secondary structure											.	.	.	.	.		S			S	S							S		S	S	S						T								S	T	T		T	T	G	G	G					G	G	G	S	S	S			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.											.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	S	R	A	S	M	L	M	V	A	V	V	M	F	F	A	F	S	C	L	F	T	L	S	P	A	N	M	A	E	A	K	A	Q	N	I	P	V	L	S	Y	L	A	N	H	F	A	S	M	T	G	T	K	T	T	F	A	I	T	L	E	Y	A	A	S	I	I	A	L	V	A	I	F	K	S	F	F	G	H
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	I	G	G	V	L	I	A	A	V	C	Y	V	L	S	T	T	A	I	M	G	M	I	P	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W
Template Known Secondary structure																		T	T				S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.																																		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.					.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		Y	L	G	T	L	E	G	L	N	G	L	V	L	K	F	G	Y	K	G	D	K	T	K	V	S	L	G	K	L	N	T	I	S	M	I	F	I	M	G	S	T	W	V	V	A	Y	A	N	P	N	I	L	D	L	.	.	.	.	I	E	A	M	G	A	P	I	I	A	S	L	L	C	L	L	P	M	Y	A	I	R
Query Conservation																																																								.	.	.	.
Alig confidence																																																								.	.	.	.
Template Conservation
Template Sequence		T	L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L	F	P	P	I	F	A	R	V	N	K	A	G	T	P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L
Template Known Secondary structure								T	T	S	S	T	T	T	S	S		S									S	S	S	S																	T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	P	S	L	A	K	Y	R	G	R	L	D	N	V	F	V	T	V	I	G	L	L	T	I	L	N	I	V	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	G	H	G	H	F	G	K	A	R	P	A	Y	L	A	V	T	T	I	A	F	L	Y	C	I	W	A	V	V	G
Template Known Secondary structure			T		T	T		S	S	S																						S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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