Job Description P0AAD8 Confidence 96.22% Date Thu Jan 5 11:12:39 GMT 2012 Rank 8 Aligned Residues 389 % Identity 12% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	S	S	W	R	K	S	D	T	T	W	T	L	G	L	F	G	T	A	I	G	A	G	V	L	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	R	A	G	F	G	G	L	I	P	I	L	L	M	L	V	L	A	Y	P	I	A	F	Y	C	H	R	A	L	A	R	L
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	E	P	P	E	F	S	T	A	S	W	I	F	M	M	F	A	S	C	T	S	A	A	V	L	F	W	G	S	I	E	I	Y	Y	Y	I	S	T	P	P	F	G	L	E	P	N	S	T	G	A	K	E	L	G	L	A	Y	S	L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F
Template Known Secondary structure		S	S			S	S											T					S																S		S	T	T			T	T																T	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		C	L	S	G	S	N	P	S	G	N	I	T	E	T	V	E	E	H	F	G	K	T	.	.	.	.	.	G	G	V	V	I	T	F	L	Y	F	F	A	I	C	P	L	L	W	I	Y	G	V	T	I	T	N	T	F	M	T	F	W	E	N	Q	L	G	F	A	P	L	N	R	G	F	V	A	L	F	L	L	L	L
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.
Template Conservation
Template Sequence		F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I
Template Known Secondary structure				T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T	T	S	T	T				T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		149	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.																										.	.	.
Query SS confidence							.	.	.	.	.	.																										.	.	.
Query Sequence		M	A	F	V	I	.	.	.	.	.	.	W	F	G	K	D	L	M	V	K	V	M	S	Y	L	V	W	P	F	I	A	S	L	V	L	I	.	.	.	S	L	S	L	I	P	Y	W	N	S	A	V	I	D	Q	V	D	L	G	S	L	S	L	T	G	H	D	G	I	L	I	T	V	W	L	G	I	S	I	M	V
Query Conservation							.	.	.	.	.	.																										.	.	.
Alig confidence							.	.	.	.	.	.																										.	.	.
Template Conservation
Template Sequence		I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y
Template Known Secondary structure									S	S				T	T																																																T					S	S								T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	F	N	F	S	P	I	V	S	S	F	V	V	S	K	R	E	E	Y	E	K	D	F	G	R	D	F	T	E	R	K	C	S	Q	I	I	S	R	A	S	M	L	M	V	A	V	V	M	F	F	A	F	S	C	L	F	T	L	S	P	A	N	M	A	E	A	K	A	Q	N	I	P	V	L	S	Y	L	A	N
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Sequence		W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	.	.	.	.	.	.	.	.	.	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	.	.	.	.	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q
Template Known Secondary structure								T											T		S	.	.	.	.	.	.	.	.	.	S																							.	.	.	.													T	T	S								G	G
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																								.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340										.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.					.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	A	S	M	T	G	T	K	T	T	F	A	I	T	L	E	Y	A	A	S	I	I	A	L	V	A	I	F	K	S	F	F	G	H	Y	L	G	T	L	E	G	L	N	G	L	V	L	K	F	G	Y	K	G	D	K	T	K	V	S	L	G	K	L	N	T	I	S	M	I	F	I	M	G	S	T	W	V	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G
Template Known Secondary structure		G												T	S	S	S	T	T																												T	T	S		S	S	S	S	S		S	S		S	T	T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	N	P	N	I	L	D	L	I	E	A	M	G	A	P	I	I	A	S	L	L	C	L	L	P	M	Y	A	I	R	K	A	P	S	L	A	K
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K
Template Known Secondary structure		.	.	S	S																																T
Template Predicted Secondary structure		.	.
Template SS confidence
				468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.