Job Description P0AAD8 Confidence 99.97% Date Thu Jan 5 11:12:39 GMT 2012 Rank 2 Aligned Residues 392 % Identity 12% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	W	R	K	S	D	T	T	W	T	L	G	L	F	G	T	A	I	G	A	G	V	L	F	F	P	I	R	A	G	F	G	G	L	I	P	I	L	L	M	L	V	L	A	Y	P	I	A	F	Y	C	H	R	A	L	A	R	L	C	L	S	G	S	N	P	S	G	N	I	T	E	T	V	E	E	H	F	G	K
Query Conservation
Alig confidence																																																																									.
Template Conservation																																																																									.
Template Sequence		K	N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	.	F	I	H	K	A	I	G	D
Template Known Secondary structure						B																		T	T	T	S									G	G	G																								T	T				T	T	T				.								S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.
			95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	T	G	G	V	V	I	T	F	L	Y	F	F	A	I	C	P	L	L	W	I	Y	G	V	T	I	T	N	T	F	M	T	F	W	E	N	Q	L	G	F	A	P	L	N	R	G	F	V	A	L	F	L	L	L	L	M	A	F	V	I	W	F	G	K	D	L	M	V	K	V	M	S	Y	L	V	W	P	F	I	A
Query Conservation		.
Alig confidence		.																																					.	.
Template Conservation																																							.	.
Template Sequence		N	I	I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	.	.	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L
Template Known Secondary structure		S																																	T	T			.	.																								T
Template Predicted Secondary structure																																							.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	V	L	I	S	L	S	L	I	P	Y	W	N	S	A	V	I	D	Q	V	D	L	G	S	L	S	L	T	G	H	D	G	I	L	I	T	V	W	L	G	I	S	I	M	V	F	S	F	N	F	S	P	I	V	S	S	F	V	V	S	K	R	E	E	Y	E	K	D	F	G	R	D	F	T	E	R	K	C	S
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	G	L	F	I	F	A	G	L	.	.	.	.	.	.	.	.	I	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	.	.	.	.	.	.	.	.	.	.	K	N	V	P
Template Known Secondary structure												.	.	.	.	.	.	.	.					G	G	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170									.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.											.	220	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	I	S	R	A	S	M	L	M	V	A	V	V	M	F	F	A	F	S	C	L	F	T	L	S	P	A	N	M	A	E	A	K	A	Q	N	I	P	V	L	S	Y	L	A	N	H	F	A	S	M	T	G	T	K	T	T	F	A	I	T	L	E	Y	A	A	S	I	I	A	L	V	A	I	F	K	S	F	F	G
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	I	F	I	S	I	L	I	V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	.	.	.	.	.	.	.	.	.	.	.	.	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A
Template Known Secondary structure																								T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.													.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	L	G	T	L	E	G	L	N	G	L	V	L	K	F	G	Y	K	G	D	K	T	K	V	S	L	G	K	L	N	T	I	S	M	I	F	I	M	G	S	T	W	V	V	A	Y	A	N	P	N	I	L	D	L	I	E	A	M	G	A	P	I	I	A	S	L	L	C	L	L	P	M	Y	A	I	R	K	A	P
Query Conservation
Alig confidence																															.	.
Template Conservation																															.	.
Template Sequence		T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R	K	V	W	F	K	.	.	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E
Template Known Secondary structure				T	T	T											S	S			S	S			T	T	S			S	.	.		T																	S																											T
Template Predicted Secondary structure																															.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	A	K	Y	R	G	R	L	D	N	V	F	V	T	V	I	G	L	L	T	I	L	N	I	V	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	G	R	K	E	I	V	I	F	S	F	I	V	V	L	G	V	F	L	L	L	L	Y	Y	Q	W	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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