Job Description P0AAD8 Confidence 1.53% Date Thu Jan 5 11:12:39 GMT 2012 Rank 86 Aligned Residues 242 % Identity 10% Template c3eh4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus Resolution 2.90 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																			.	.	.	.
Query SS confidence																																			.	.	.	.
Query Sequence		S	I	V	S	S	Q	T	K	Q	S	S	W	R	K	S	D	T	T	W	T	L	G	L	F	G	T	A	I	G	A	G	V	L	.	.	.	.	F	F	P	I	R	A	G	F	G	G	L	I	P	I	L	L	M	L	V	L	A	Y	P	I	A	F	Y	C	H	R	A	L	A	R	L	C	L	S	G	S	N	P	S
Query Conservation																																			.	.	.	.
Alig confidence																																			.	.	.	.																																			.
Template Conservation																																																																									.
Template Sequence		P	K	Q	A	G	G	R	L	V	S	D	P	M	A	R	L	A	F	L	L	F	L	L	L	S	T	P	V	G	F	H	H	Q	F	A	D	P	G	I	D	P	T	W	K	M	I	H	S	V	L	T	L	F	V	A	V	P	S	L	M	T	A	F	T	V	A	A	S	L	E	F	.	A	G	R	L	R	G	G	R
Template Known Secondary structure						T	S			S		T	T													S	S	T	T	G	G	G	G		T	T		S	S	S																T																	.					T	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		G	N	I	T	E	T	V	E	E	H	F	G	K	T	G	G	V	V	I	T	F	L	Y	F	F	A	I	C	P	L	L	W	I	Y	G	V	T	I	T	N	T	F	M	T	F	W	E	N	Q	L	G	F	A	P	L	N	R	G	F	V	A	L	F	L	L	L	L	M	A	F	V	I	W	F	G	K	D	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																																															.	.	.
Template Conservation
Template Sequence		G	L	F	G	W	I	R	A	L	P	W	D	N	P	A	F	V	A	P	V	L	G	L	L	G	F	I	P	G	G	A	G	G	I	V	N	A	S	F	T	L	D	Y	V	V	H	N	T	A	W	V	P	G	H	F	H	L	Q	V	A	S	L	V	T	L	T	A	M	G	S	L	Y	W	L	L	P	N	L	T	G
Template Known Secondary structure		S	S	S						S		T	T																										S	G	G	G					T	T	B	T										T	T	T									T	T	S	S	T	T	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
							159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	L	M	V	K	V	M	S	Y	L	V	W	P	F	I	A	S	L	V	L	I	S	L	S	L	I	P	Y	W	N	S	A	V	I	D	Q	V	D	L	G	S	L	S	L	T	G	H	D	G	I	L	I	T	V	W	L	G	I	S	I	M	V	F	S	F	N	F	S	P	I	V	S	S	F	V	V
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		K	P	I	S	D	A	Q	R	R	L	G	L	A	V	V	W	L	W	F	L	G	M	M	I	M	A	V	G	L	H	W	A	G	L	L	N	V	P	R	R	A	Y	I	A	Q	V	P	D	A	Y	P	H	A	A	V	P	M	V	F	N	V	L	A	G	I	V	L	L	V	A	L	L	L	F	I	Y	G	L	F	S
Template Known Secondary structure																																				T	T		B	S	S			G	G	G	S	T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	R	E	E	Y	E	K	D	F	G	R	D	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	L	S	R	E	R	K	P	E	L	A	E	A	P
Template Known Secondary structure				T		S				S	S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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