Job Description P0AAD8 Confidence 99.86% Date Thu Jan 5 11:12:39 GMT 2012 Rank 3 Aligned Residues 402 % Identity 10% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		S	D	S	I	V	S	S	Q	T	K	Q	S	S	W	R	K	S	D	T	T	W	T	L	G	L	F	G	T	A	I	G	A	G	V	L	F	F	P	.	I	R	A	G	F	G	G	L	I	P	I	L	L	M	L	V	L	A	Y	P	I	A	F	Y	C	H	R	A	L	A	R	L	C	L	S	G	S	N	P	S	G
Query Conservation																																								.
Alig confidence																							.	.																.																																						.	.	.
Template Conservation																							.	.																																																						.	.	.
Template Sequence		N	P	S	N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	.	.	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.	.	I
Template Known Secondary structure			S	T	T	S				G	G	G			B								.	.								S	T										T	T	T	S																								T								.	.	.
Template Predicted Secondary structure																							.	.																																																						.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	T	E	T	V	E	E	H	F	G	K	T	G	G	V	V	I	T	F	L	Y	F	F	A	I	C	P	L	L	W	I	Y	G	V	T	I	T	N	T	F	M	T	F	W	E	N	Q	L	G	F	A	P	L	N	R	G	F	V	A	L	F	L	L	L	L	M	A	F	V	I	W	F	G	K	D	L	M	V	K
Query Conservation
Alig confidence																																																							.	.
Template Conservation																																																							.	.
Template Sequence		N	F	T	V	A	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	.	.	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W
Template Known Secondary structure							T	T	T	T	S		T	T	T	T																																							.	.																	T	T
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	S	Y	L	V	W	P	F	I	A	S	L	V	L	I	S	L	S	L	I	P	Y	W	N	S	A	V	I	D	Q	V	D	L	G	S	L	S	L	T	G	H	D	G	I	L	I	T	V	W	L	G	I	S	I	M	V	F	S	F	N	F	S	P	I	V	S	S	F	V	V	S	K	R	E	E	Y	E	K	D
Query Conservation
Alig confidence																										.	.	.	.	.																																																.	.	.	.
Template Conservation																										.	.	.	.	.																																																.	.	.	.
Template Sequence		M	N	V	F	A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	.	.	.	.	.	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	.	.	.	.
Template Known Secondary structure																										.	.	.	.	.	T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.																																																.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190						.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	R	D	F	T	E	R	K	C	S	Q	I	I	S	R	A	S	M	L	M	V	A	V	V	M	F	F	A	F	S	C	L	F	T	L	S	P	A	N	M	A	E	A	K	A	Q	N	I	P	V	L	S	Y	L	A	N	H	F	A	S	M	T	G	T	K	T	T	F	A	I	T	L	E	Y	A	A	S	I	I
Query Conservation
Alig confidence		.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L
Template Known Secondary structure		.	.	.	T	T																																								S		S			.	.	.	.	.	.	.	.	.	.	.	.	.									T
Template Predicted Secondary structure		.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.														.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	V	A	I	F	K	S	F	F	G	H	Y	L	G	T	L	E	G	L	N	G	L	V	L	K	F	G	Y	K	G	D	K	T	K	V	S	L	G	K	L	N	T	I	S	M	I	F	I	M	G	S	T	W	V	V	A	Y	A	N	P	N	I	L	D	L	I	E	A	M	G	A	P	I	I	A	S	L	L	C
Query Conservation
Alig confidence																																				.	.	.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	T	.	.	.	.	.	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I
Template Known Secondary structure												T	T						T											S	T	T	T			.	.	.	.	.															T		G	G	G	T														T	T
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.						.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.								.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure														.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.
Query Sequence		L	L	P	M	Y	A	I	R	K	A	P	S	.	.	.	.	.	.	.	L	A	K	Y	R	G	R	L	D	N	V	F	V	T	V	I	G	L	L	T	I	L	N	I	V	Y	K	L
Query Conservation														.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F
Template Known Secondary structure								T	T	S	T	T								T	B	S	S	S	T	T		T	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.