Email l.a.kelley@imperial.ac.uk Description P0AG63 Date Thu Jan 5 11:28:13 GMT 2012 Unique Job ID 26753ae3d5f7adbb

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2xznQ_ 100.0 24 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 2 d2gy9q1 100.0 100 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 3 c3bbnQ_ 100.0 37 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 4 d2uubq1 100.0 49 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 5 d1i94q_ 100.0 49 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 6 c1s1hQ_ 100.0 35 PDB header:ribosome Chain: Q: PDB Molecule:40s ribosomal protein s11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 7 d1ripa_ 100.0 54 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 8 c2zkqq_ 100.0 36 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 9 c3izbP_ 99.8 31 PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 10 c3iz6P_ 99.8 24 PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 11 d1e32a1 26.8 38 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 12 c2xzm1_ 26.0 50 PDB header:ribosome Chain: 1: PDB Molecule:ribosomal protein s28e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 13 c1negA_ 23.6 7 PDB header:structural protein Chain: A: PDB Molecule:spectrin alpha chain, brain; PDBTitle: crystal structure analysis of n-and c-terminal labeled sh3-2 domain of alpha-chicken spectrin 14 d1nega_ 23.6 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 15 d1ue9a_ 22.4 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 16 d1uuea_ 21.7 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 17 d1ny4a_ 21.6 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 18 d1ne3a_ 20.5 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 19 c2pqhA_ 19.9 7 PDB header:structural protein Chain: A: PDB Molecule:spectrin alpha chain, brain; PDBTitle: structure of sh3 chimera with a type ii ligand linked to the chain c-2 terminal 20 c2rqrA_ 19.8 25 PDB header:protein binding Chain: A: PDB Molecule:engulfment and cell motility protein 1, linker, dedicator PDBTitle: the solution structure of human dock2 sh3 domain - elmo1 peptide2 chimera complex 21 d1h8ka_ not modelled 19.8 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 22 c2jvvA_ not modelled 19.6 12 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 23 c2kvqG_ not modelled 19.6 12 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 24 d1utia_ not modelled 19.4 17 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 25 d1e6ga_ not modelled 19.3 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 26 c2d8jA_ not modelled 19.0 10 PDB header:transferase Chain: A: PDB Molecule:fyn-related kinase; PDBTitle: solution structure of the sh3 domain of fyn-related kinase 27 c3d3rA_ not modelled 18.9 24 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 28 d1nz9a_ not modelled 18.9 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 29 c3nmzD_ not modelled 18.6 25 PDB header:cell adhesion/cell cycle Chain: D: PDB Molecule:rho guanine nucleotide exchange factor 4; PDBTitle: crytal structure of apc complexed with asef 30 d3d3ra1 not modelled 18.4 24 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 31 c2dl3A_ not modelled 18.3 16 PDB header:cell adhesion, signaling protein Chain: A: PDB Molecule:sorbin and sh3 domain-containing protein 1; PDBTitle: solution structure of the first sh3 domain of human sorbin2 and sh3 domain-containing protein 1 32 c2dmoA_ not modelled 18.1 10 PDB header:signaling protein Chain: A: PDB Molecule:neutrophil cytosol factor 2; PDBTitle: refined solution structure of the 1st sh3 domain from human2 neutrophil cytosol factor 2 (ncf-2) 33 d2ot2a1 not modelled 17.9 27 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 34 d1arka_ not modelled 17.6 16 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 35 c2nwmA_ not modelled 17.6 16 PDB header:cell adhesion Chain: A: PDB Molecule:vinexin; PDBTitle: solution structure of the first sh3 domain of human vinexin2 and its interaction with the peptides from vinculin 36 d1nppa2 not modelled 17.5 36 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 37 d1gria2 not modelled 17.3 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 38 d1k4us_ not modelled 17.3 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 39 d1dzfa2 not modelled 17.3 18 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 40 d1u0la1 not modelled 17.1 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 41 d1uj0a_ not modelled 17.1 6 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 42 d1udxa3 not modelled 16.9 36 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 43 c2jteA_ not modelled 16.9 7 PDB header:signaling protein Chain: A: PDB Molecule:cd2-associated protein; PDBTitle: third sh3 domain of cd2ap 44 d1i07a_ not modelled 16.6 21 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 45 c2yupA_ not modelled 16.5 7 PDB header:cell adhesion Chain: A: PDB Molecule:vinexin; PDBTitle: solution structure of the second sh3 domain of human vinexin 46 d2z1ca1 not modelled 16.5 22 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 47 c1zx6A_ not modelled 16.4 14 PDB header:protein binding Chain: A: PDB Molecule:ypr154wp; PDBTitle: high-resolution crystal structure of yeast pin3 sh3 domain 48 c1x2pA_ not modelled 16.0 17 PDB header:transferase Chain: A: PDB Molecule:protein arginine n-methyltransferase 2; PDBTitle: solution structure of the sh3 domain of the protein2 arginine n-methyltransferase 2 49 c3cqtA_ not modelled 15.8 15 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fyn; PDBTitle: n53i v55l mutant of fyn sh3 domain 50 d1hmja_ not modelled 15.7 24 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 51 c2ct3A_ not modelled 15.6 21 PDB header:signaling protein Chain: A: PDB Molecule:vinexin; PDBTitle: solution structure of the sh3 domain of the vinexin protein 52 d1pwta_ not modelled 15.4 6 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 53 c2e5kA_ not modelled 15.3 10 PDB header:protein binding Chain: A: PDB Molecule:suppressor of t-cell receptor signaling 1; PDBTitle: solution structure of sh3 domain in suppressor of t-cell2 receptor signaling 1 54 c2xmfA_ not modelled 15.2 16 PDB header:motor protein Chain: A: PDB Molecule:myosin 1e sh3; PDBTitle: myosin 1e sh3 55 c2crvA_ not modelled 14.7 31 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-2; PDBTitle: solution structure of c-terminal domain of mitochondrial2 translational initiationfactor 2 56 c3p8bB_ not modelled 14.6 25 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 57 d1ppya_ not modelled 14.2 36 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 58 d1e6ha_ not modelled 14.2 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 59 c2dl8A_ not modelled 14.1 5 PDB header:signaling protein Chain: A: PDB Molecule:slit-robo rho gtpase-activating protein 2; PDBTitle: solution structure of the sh3 domain of human slit-robo rho2 gtpase-activating protein 2 60 d1t9ha1 not modelled 14.1 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 61 c3iz6Y_ not modelled 13.9 21 PDB header:ribosome Chain: Y: PDB Molecule:40s ribosomal protein s28 (s28e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 62 c2dlpA_ not modelled 13.8 7 PDB header:structural protein Chain: A: PDB Molecule:kiaa1783 protein; PDBTitle: solution structure of the sh3 domain of human kiaa17832 protein 63 c2d8hA_ not modelled 13.8 10 PDB header:unknown function Chain: A: PDB Molecule:sh3yl1 protein; PDBTitle: solution structure of the sh3 domain of hypothetical2 protein sh3yl1 64 c2c45F_ not modelled 13.6 27 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 65 c3ougA_ not modelled 13.5 45 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis 66 c1pt1B_ not modelled 13.4 36 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine 67 c2krnA_ not modelled 13.3 28 PDB header:signaling protein Chain: A: PDB Molecule:cd2-associated protein; PDBTitle: high resolution structure of the second sh3 domain of cd2ap 68 c2dbkA_ not modelled 13.2 15 PDB header:signaling protein Chain: A: PDB Molecule:crk-like protein; PDBTitle: solution structures of the sh3 domain of human crk-like2 protein 69 c1wxbA_ not modelled 13.1 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:epidermal growth factor receptor pathway PDBTitle: solution structure of the sh3 domain from human epidermal2 growth factor receptor pathway substrate 8-like protein 70 d1oeba_ not modelled 13.0 18 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 71 d1opka1 not modelled 13.0 10 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 72 d1wpga1 not modelled 12.9 25 Fold:Double-stranded beta-helix Superfamily:Calcium ATPase, transduction domain A Family:Calcium ATPase, transduction domain A 73 d2uubd1 not modelled 12.9 20 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 74 c3plxB_ not modelled 12.7 36 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168 75 d2f4la1 not modelled 12.4 18 Fold:CUB-like Superfamily:Acetamidase/Formamidase-like Family:Acetamidase/Formamidase-like 76 c1vc3B_ not modelled 12.4 27 PDB header:lyase Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain; PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase 77 c1uheA_ not modelled 12.4 55 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 78 c2rf0D_ not modelled 12.3 14 PDB header:transferase Chain: D: PDB Molecule:mitogen-activated protein kinase kinase kinase 10; PDBTitle: crystal structure of human mixed lineage kinase map3k10 sh3 domain 79 c2eyxA_ not modelled 12.1 17 PDB header:signaling protein Chain: A: PDB Molecule:v-crk sarcoma virus ct10 oncogene homolog PDBTitle: c-terminal sh3 domain of ct10-regulated kinase 80 c2dilA_ not modelled 12.1 10 PDB header:cell adhesion Chain: A: PDB Molecule:proline-serine-threonine phosphatase-interacting PDBTitle: solution structure of the sh3 domain of the human proline-2 serine-threonine phosphatase-interacting protein 1 81 d1g31a_ not modelled 12.1 18 Fold:GroES-like Superfamily:GroES-like Family:GroES 82 c2ct4A_ not modelled 11.8 14 PDB header:signaling protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: solution strutcure of the sh3 domain of the cdc42-2 interacting protein 4 83 d1c06a_ not modelled 11.8 20 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 84 c1pyuD_ not modelled 11.7 36 PDB header:lyase Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain; PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys 85 c2yuoA_ not modelled 11.7 21 PDB header:signaling protein Chain: A: PDB Molecule:run and tbc1 domain containing 3; PDBTitle: solution structure of the sh3 domain of mouse run and tbc12 domain containing 3 86 c2i0nA_ not modelled 11.6 19 PDB header:structural protein Chain: A: PDB Molecule:class vii unconventional myosin; PDBTitle: structure of dictyostelium discoideum myosin vii sh3 domain2 with adjacent proline rich region 87 d1ov3a1 not modelled 11.5 22 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 88 c1z9zA_ not modelled 11.5 13 PDB header:structural protein Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: crystal structure of yeast sla1 sh3 domain 3 89 c2k6dA_ not modelled 11.5 14 PDB header:sh3 domain/ubiquitin Chain: A: PDB Molecule:sh3 domain-containing kinase-binding protein 1; PDBTitle: cin85 sh3-c domain in complex with ubiquitin 90 c1yn8E_ not modelled 11.4 21 PDB header:unknown function Chain: E: PDB Molecule:nap1-binding protein 2; PDBTitle: sh3 domain of yeast nbp2 91 d1j3ta_ not modelled 11.3 15 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 92 c2djqA_ not modelled 11.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 domain containing ring finger 2; PDBTitle: the solution structure of the first sh3 domain of mouse sh32 domain containing ring finger 2 93 c2creA_ not modelled 11.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hef-like protein; PDBTitle: solution structure of rsgi ruh-036, an sh3 domain from2 human cdna 94 c1w70A_ not modelled 11.1 10 PDB header:sh3 domain Chain: A: PDB Molecule:neutrophil cytosol factor 4; PDBTitle: sh3 domain of p40phox complexed with c-terminal polyproline2 region of p47phox 95 c1wi7A_ not modelled 11.0 17 PDB header:protein binding Chain: A: PDB Molecule:sh3-domain kinase binding protein 1; PDBTitle: solution structure of the sh3 domain of sh3-domain kinase2 binding protein 1 96 d2fo0a1 not modelled 11.0 10 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 97 c2cucA_ not modelled 11.0 10 PDB header:signaling protein Chain: A: PDB Molecule:sh3 domain containing ring finger 2; PDBTitle: solution structure of the sh3 domain of the mouse2 hypothetical protein sh3rf2 98 c1zukA_ not modelled 10.9 6 PDB header:contractile protein Chain: A: PDB Molecule:myosin tail region-interacting protein mti1; PDBTitle: yeast bbc1 sh3 domain complexed with a peptide from las17 99 c3mmlD_ not modelled 10.9 24 PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436