Return to main results Retrieve Phyre Job Id

Job DescriptionP0AG63
Confidence100.00%DateThu Jan 5 11:28:13 GMT 2012
Rank7Aligned Residues80
% Identity54%Templated1ripa_
SCOP infoOB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAV
Query Conservation    
 
 
 


 

 


 
 
 
   
 

 
   
 


 


       

 
 
 
 




 
   
  

 

 
Alig confidence 















































































Template Conservation 
 
 
 
 


 

 


 
 
 
   



 
   
 


 



     


 
 
 
 




 
   
  

 

 
Template Sequence  QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAV
Template Known Secondary structure 

S
B

S


SSS
S


B

S


S
SSS



SB






STT
SS


B




SSS








BSSS
Template Predicted Secondary structure 































Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60.........70.........80....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions