Job Description P31057 Confidence 97.60% Date Thu Jan 5 11:46:53 GMT 2012 Rank 25 Aligned Residues 227 % Identity 15% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.										.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																				.	.									.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.									.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		M	K	P	T	T	I	S	L	L	Q	K	Y	K	Q	E	K	K	R	.	.	F	A	T	I	T	A	Y	D	.	.	.	.	.	.	Y	S	F	A	K	L	F	A	D	E	G	L	N	V	M	L	V	G	.	.	.	.	.	.	.	.	.	D	S	L	G	M	T	V	Q	G	H	D	S	T	L	P	V	T	V	A
Query Conservation																				.	.									.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence								.												.	.									.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation								.
Template Sequence		M	N	R	Y	Q	A	.	L	F	Q	R	L	S	A	A	Q	Q	G	A	F	V	P	F	V	T	I	G	D	P	N	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	A	K	T	T	P	D
Template Known Secondary structure								.									T	B									T	T	S	S															T	T		S	S										T	T																T	T
Template Predicted Secondary structure								.
Template SS confidence
		1	.	.	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		64	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure												.																							.	.	.																						.	.
Query SS confidence												.																							.	.	.																						.	.
Query Sequence		D	I	A	Y	H	T	A	A	V	R	.	R	G	A	P	N	C	L	L	L	A	D	L	P	F	M	A	Y	A	T	P	E	Q	.	.	.	A	F	E	N	A	A	T	V	M	R	A	G	A	N	M	V	K	I	E	G	G	.	.	E	W	L	V	E	T	V	Q	M	L	T	E	R	A	V	P	V	C	G	H	L
Query Conservation												.																							.	.	.																						.	.
Alig confidence												.										.	.	.	.	.									.	.	.																						.	.																			.	.	.
Template Conservation																						.	.	.	.	.																																																					.	.	.
Template Sequence		I	C	F	E	L	I	A	Q	I	R	A	R	N	P	E	T	P	I	G	L	.	.	.	.	.	L	M	Y	A	N	L	V	Y	A	R	G	I	D	D	F	Y	Q	R	C	Q	K	A	G	V	D	S	V	L	I	A	D	V	P	T	N	E	S	Q	P	F	V	A	A	A	E	K	F	G	I	Q	P	I	.	.	.
Template Known Secondary structure															T	T	S					.	.	.	.	.									T	T													T							T	T	S		G	G	G											T	T					.	.	.
Template Predicted Secondary structure																						.	.	.	.	.																																																					.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		G	L	T	P	Q	S	V	N	I	F	G	G	Y	K	V	Q	G	R	G	D	E	A	G	D	Q	L	L	S	D	A	L	A	L	E	A	A	G	A	Q	L	L	V	L	E	C	V	.	.	P	V	E	L	A	K	R	I	T	E	A	L	A	I	P	V	I	G	I	G	A	G	N	V	T	D	G	Q	I	L	V	M
Query Conservation																																																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.																				.	.																.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.																																					.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	F	I	A	P	P	T	A	S	D	.	.	.	.	.	.	E	T	L	R	A	V	A	Q	L	G	K	G	Y	T	Y	L	L	S	R	A	P	V	H	A	L	L	E	R	L	Q	Q	F	D	A	P	P	.	A	L	L	G	F	G	I	S	E	P	A	Q	V	K	Q	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.					T	T			S	.	.	.	.	.	.												S																				T	T				.					S	S			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.																																					.
Template SS confidence
														152	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		H	D	A	F	G	I	T	G	G	H	I	P	K	F	A	K	N	F	L	A	E	.	.	.	T	G	D	I	R	A	A	V	R	Q	Y	M	A	E	V	E	S	G	V
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		I	E	A	G	A	A	G	A	I	S	G	S	A	V	V	K	I	I	E	T	H	L	D	N	P	A	K	Q	L	T	E	L	A	N	F	T	Q	A	M	K	K	A	T
Template Known Secondary structure				T	T		S					S	S									T	T	T																			T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions