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Job DescriptionP31057
Confidence89.71%DateThu Jan 5 11:46:53 GMT 2012
Rank186Aligned Residues153
% Identity11%Templatec1gthD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40......... 50.........60.........70.........
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Query Sequence  DYSFAKLFADEGLNVMLVGDSLGM. . . . . . . . . . . . . . . . . . . . . . . . . . TVQGHDSTLPVTVADIAYHTAAVRRGAPNC
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Template Sequence  SSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDN
Template Known Secondary structure  ST
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B

GGG




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   556...560.........570.........580.........590.........600.........610.........620.........630.....
 
   80.........90.........100.........110.........120.........130.........140.........150.........
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Query Sequence  LLLADLPFMAYATPEQAFENAATVMRAGANMVKIEGGEWLVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEA
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Template Sequence  IVIASI. MC. SYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPN
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SSGGGGT
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   636...640. .. ......650.........660.........670.........680.........690.........700.........710...
 
   160.........170.........180
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Query Sequence  GDQLLSDALALEAAGAQLLVL
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Template Sequence  VTDIVSIARAAKEGGADGVTA
Template Known Secondary structure  SS
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   714.....720.........730....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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