Job Description P0AAE8 Confidence 50.89% Date Thu Jan 5 11:12:43 GMT 2012 Rank 9 Aligned Residues 337 % Identity 10% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.								.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																	.																																.	.	.	.	.	.	.
Query SS confidence																	.																																.	.	.	.	.	.	.
Query Sequence		P	A	N	L	A	S	I	G	G	I	A	I	W	G	W	.	I	I	S	I	I	G	A	M	S	L	A	Y	V	Y	A	R	L	A	T	K	N	P	Q	Q	G	G	P	I	A	Y	A	.	.	.	.	.	.	.	G	E	I	S	P	A	F	G	F	Q	T	G	V	L	Y	Y	H	A	N	W	I	G	N	L	A	I
Query Conservation																	.																																.	.	.	.	.	.	.
Alig confidence																	.																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	A	K	E	L	G	L	A	Y	S	L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S
Template Known Secondary structure																T	S																				T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.									.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	T	A	V	S	Y	L	S	T	F	F	P	V	L	N	D	P	V	P	A	G	I	A	C	I	A	I	V	W	V	F	T	F	V	N	M	L	.	.	.	.	.	.	.	.	G	G	T	W	V	S	R	L	T	T	I	G	L	V	L	V	L	I	P	V	V	M	T	A	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T
Template Known Secondary structure														T	T	S	T	T				T																				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
			163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	I	V	G	W	H	W	F	D	A	A	T	Y	A	A	N	W	N	T	A	D	T	T	D	G	H	A	I	I	K	S	I	L	L	C	L	W	A	F	V	G	V	E	S	A	A	V	S	T	G	M	V	K	N	P	K	R	T	V	P	L	A	T	M	L	G	T	G	L	A	G	I	V	Y	I	A	A	T	Q	V
Query Conservation		.
Alig confidence		.																																																						.	.
Template Conservation																																																								.	.
Template Sequence		D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	.	.	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V
Template Known Secondary structure																T					S	S								T											T											T		S	S	.	.
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		242	.	.	.										.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.					.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.																																																										.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.																																																										.	.	.	.
Query Sequence		L	S	G	M	.	.	.	.	.	.	.	.	.	Y	P	S	S	V	M	A	A	S	G	A	P	F	A	I	S	A	S	T	I	L	G	N	W	A	A	P	L	V	S	A	F	T	A	F	A	C	L	T	S	L	G	S	W	M	M	L	V	G	Q	A	G	V	R	A	A	N	.	.	.	.	D	G	N	F	P	K
Query Conservation						.	.	.	.	.	.	.	.	.																																																										.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.																																																										.	.	.	.
Template Conservation
Template Sequence		L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P
Template Known Secondary structure												T	T	S								G	G	G												T	S	S	S	T	T																												T	T	S		S	S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	G	E	V	D	S	N	G	I	P	K	K	G	L	L	L	A	A	V	K	M	T	A	L	M	I	L	I	T	L	M	N	S	A	G	G	K	A	S	D	L	F	G	E	L	T	G	I	A	V	L	L	T	M	L	P	Y	F	Y	S	C	V	D	L	I	R	F	E	G	V
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		L	L	V	R	.	.	.	.	.	.	.	.	.	.	.	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	.	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K	D
Template Known Secondary structure		S	T	T		.	.	.	.	.	.	.	.	.	.	.																			S	.	S																																T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		446	.	.	.												450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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